Orus047546.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- ZFX
- Assembly
- GCA_958502075.1
- Location
- OY293312.1:23276900-23299851[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.6 1.2e+03 1.8 0.1 1 11 202 212 202 219 0.78 2 14 5.1 8.3e+02 2.4 1.0 2 23 339 361 338 361 0.94 3 14 0.052 8.4 8.7 0.9 2 23 392 413 391 413 0.95 4 14 0.00022 0.035 16.1 1.5 3 23 421 441 419 441 0.94 5 14 0.068 11 8.3 2.0 1 23 447 470 447 470 0.92 6 14 1.1 1.8e+02 4.5 0.5 3 12 480 489 479 493 0.84 7 14 0.02 3.2 10.0 1.9 3 23 509 528 507 528 0.97 8 14 6.1e-05 0.0098 17.9 1.6 1 23 534 556 534 556 0.99 9 14 1.9e-05 0.0031 19.5 0.2 1 23 562 584 562 584 0.94 10 14 4.1e-07 6.6e-05 24.7 0.6 2 23 590 611 590 611 0.98 11 14 2.8e-07 4.5e-05 25.2 2.6 1 23 617 639 617 639 0.98 12 14 2.4e-05 0.0038 19.2 2.0 1 23 645 667 645 667 0.98 13 14 0.0019 0.31 13.2 2.5 1 23 673 695 673 695 0.99 14 14 0.00062 0.1 14.7 4.4 1 23 706 729 706 729 0.93
Sequence Information
- Coding Sequence
- ATGAATGCTTACCTAGAACCAAGGGCAAAAGAACTGGGTAGTATATTGATGTTAAGACCAGGAGCTGTTCCCACAATCAAATATCCAAAAAAATCAGTAGCAAGTCGAAGTAATCTCATCTCAGAAGCTGTAGCAGGTACCAGTCTGGTATCACAAGTACCTCCTGTGGTTTCAGAGGAGGaacaaataccaaaaaaaaaaagattatgcTTTGATCCAAGATACGTGGGTCAAATAACCGTTTCAGATATCCTAAATCCAACACAAGCAAAGCAAGTATTGTCTATGGCTAAAAGCAGATTCTCTTCACAGGCAGCCAAAATTAAATCTCTGCAACAGAAAAACAGAAGATTAgttcaaaaaatgcaaacattgcAAAACTTGGTTCCTCCAGTGAAGAAGAAAACCCTCAAAActgtttgtgaaaaatctttgatgaaaatagaaaaagagAGAAACCCTACCAGCCTTTGTCGAGGTTGCCTAGAGAATAAACCACCCATGAAACGTCTATTtgacaacacaaaaaaatcaaaagccttgaaaattcaatttgccGAATTTTTGAACTTGGAGGTGAAGCCCTATGAAAATTATCCCTTATATATTTGCAATAtgtgcgaaaaaaaaattgatagttcACTGGAATTCAAGGCACAGTGTTTGGGGGCACAACAAGCTTtggattattattttcaaactgaTCTTACGAAGGATATTGAGAATACCGAAATTGACTATAATgatcaaaacataaaaatagaaaatgacGGAGCTGATAATGAAAATGATTCAAATGAACAAATAGCCTGTACTGAAGAAAAAGAGGAAGAAACTATAACAATCATAAACCATGATTTGGACGTCAAAGATGAGTCCATTGATGTTGAGGAAGTTGAAATAAAACAACCTGATGTGGTCAATACTAACAAAAAGAGACGACTAGAACAATATACTGCCGTTGAAGTCGAAAAAGCAATCCGAAAAGTCAGAGATAGACTTTACGGACAGGTCACTTGCATGTTCTGCAACTTTCAGGCTACCTCTAATAGAACTCTATCTCTTCATGTTAGTAGAACTCATAGGGATGAGAAACCAAAGTGGTGCTCAGTGTGTAATGGGTTATTTGAAAGTCTCGATGAGCATAATCTAAAGGTTCATTGTGATGACTTGAAGTGTGAATTTTGTGGGAAAAACCATTCCACTATGGGTAATTTTATGGATCATATGGCTGCTCATGGAGATGAACAAATTCACCTTTGCCCAGTTTGTAAAAGAGCCTTTACCTCTCTGAAACTATTAAAAAAGCACGAAATCTCACATATCGAAGATAGACCTTTTGAGTGTCATATCTGCAAAAAGAGATTTCTGTTGCCTACGATTTTGAGAACTCATTTGCGGAAAATTCATAATAGCATTATAAAAAGTCACAACTCTTGTAAAAAATGTGGCAAAACTGTGCGAAATATGGAACGTCACGATATGCGATTTCACTCTTCTAATCCTGTTGCGGATAAATGTTTGTGTCCGTACTGTGGCAAATGGTTTAGaaaatctaGATGGAGCATCCATATAAGAACCCACACAGGGGAAGCCCCATATCAGTGTCAGTATTGCGAAAAAAAGCTGAAAACCCGACCTTCTCTTATTACACATGAACGTACTCATACCGGCGAAAAACCATACCTTTGTACTGCATGTGGAAAGGGTTTCGCCCAGAGTAGCGCTTTGAAAACGCATATGTCTTTGCACCTGGGAAAACAAGAACAGTGCAACATATGTGAGAAGAGATTTAGCAGACCGGCAGAGTTGAGGGTGCATTTAAGGAAACATACAGGCGAAATCCCCTACAATTGCGAATACTGCGACCGTGGCTTCAAACAAAAAAGCCATTTGGCTGATCATCTTCGAACACACTCCGATGACAGACCACATAAATGTGAATATTGCGATAAAAGCTTCAAAGATATGGGCACCTACAGAGGTCACATGCTAATTCATAATGGGGACAAGCCTTACAAATGTTCTCAATGCACATATGCTTGTAGGAAAGCTTACGTTTTAACACAACATATGCTTATCCACGATAAGGATAGGCCGCAGCCTGATCAACCACATTGTTGTGGTGTTTGCGAGAAGAGATTCAGCACCAATGAAAATTTGAGTTCCCATTATAATTTATACCACTCAGATTTAGATATATCAAACTTTACCCAAGAACAAACTGAAGAAGAGGAAATTCCCGATACGGTACAACTTCTAGAGGGTCCTGATAAAGTGGAAATTGAGATTTTGCCACCTTATGATCTGCCTGGAGAATCAAAGTTTGATGATATGTTTTTCACTTCTCAATAA
- Protein Sequence
- MNAYLEPRAKELGSILMLRPGAVPTIKYPKKSVASRSNLISEAVAGTSLVSQVPPVVSEEEQIPKKKRLCFDPRYVGQITVSDILNPTQAKQVLSMAKSRFSSQAAKIKSLQQKNRRLVQKMQTLQNLVPPVKKKTLKTVCEKSLMKIEKERNPTSLCRGCLENKPPMKRLFDNTKKSKALKIQFAEFLNLEVKPYENYPLYICNMCEKKIDSSLEFKAQCLGAQQALDYYFQTDLTKDIENTEIDYNDQNIKIENDGADNENDSNEQIACTEEKEEETITIINHDLDVKDESIDVEEVEIKQPDVVNTNKKRRLEQYTAVEVEKAIRKVRDRLYGQVTCMFCNFQATSNRTLSLHVSRTHRDEKPKWCSVCNGLFESLDEHNLKVHCDDLKCEFCGKNHSTMGNFMDHMAAHGDEQIHLCPVCKRAFTSLKLLKKHEISHIEDRPFECHICKKRFLLPTILRTHLRKIHNSIIKSHNSCKKCGKTVRNMERHDMRFHSSNPVADKCLCPYCGKWFRKSRWSIHIRTHTGEAPYQCQYCEKKLKTRPSLITHERTHTGEKPYLCTACGKGFAQSSALKTHMSLHLGKQEQCNICEKRFSRPAELRVHLRKHTGEIPYNCEYCDRGFKQKSHLADHLRTHSDDRPHKCEYCDKSFKDMGTYRGHMLIHNGDKPYKCSQCTYACRKAYVLTQHMLIHDKDRPQPDQPHCCGVCEKRFSTNENLSSHYNLYHSDLDISNFTQEQTEEEEIPDTVQLLEGPDKVEIEILPPYDLPGESKFDDMFFTSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -