Basic Information

Insect: Orchestes rusci
Gene Symbol: -
Assembly: GCA_958502075.1
Location: OY293311.1:29510213-29511787[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0015 0.24 13.5 2.7 2 21 83 102 82 103 0.95

2 12 0.00046 0.075 15.1 3.3 1 23 124 147 124 147 0.97

3 12 0.096 16 7.8 0.1 1 23 170 192 170 192 0.97

4 12 0.0091 1.5 11.0 0.4 2 23 197 218 196 218 0.94

5 12 3.9 6.2e+02 2.8 0.5 2 23 225 249 224 249 0.68

6 12 1.5e-05 0.0024 19.8 4.2 1 23 255 277 255 277 0.98

7 12 0.00018 0.029 16.4 0.6 1 23 283 306 283 306 0.95

8 12 0.025 4.1 9.6 0.2 2 21 318 337 318 338 0.93

9 12 0.00011 0.017 17.1 0.2 1 23 355 377 355 377 0.95

10 12 8.5e-07 0.00014 23.7 0.6 1 23 383 405 383 405 0.98

11 12 2.8e-05 0.0044 19.0 2.5 1 23 411 433 411 433 0.99

12 12 0.00064 0.1 14.7 0.8 1 21 439 459 439 460 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0015	0.24	13.5	2.7	2	21	83	102	82	103	0.95
2	12	0.00046	0.075	15.1	3.3	1	23	124	147	124	147	0.97
3	12	0.096	16	7.8	0.1	1	23	170	192	170	192	0.97
4	12	0.0091	1.5	11.0	0.4	2	23	197	218	196	218	0.94
5	12	3.9	6.2e+02	2.8	0.5	2	23	225	249	224	249	0.68
6	12	1.5e-05	0.0024	19.8	4.2	1	23	255	277	255	277	0.98
7	12	0.00018	0.029	16.4	0.6	1	23	283	306	283	306	0.95
8	12	0.025	4.1	9.6	0.2	2	21	318	337	318	338	0.93
9	12	0.00011	0.017	17.1	0.2	1	23	355	377	355	377	0.95
10	12	8.5e-07	0.00014	23.7	0.6	1	23	383	405	383	405	0.98
11	12	2.8e-05	0.0044	19.0	2.5	1	23	411	433	411	433	0.99
12	12	0.00064	0.1	14.7	0.8	1	21	439	459	439	460	0.95

Sequence Information

Coding Sequence: ATGAAACCTTGGGCCCGTGGACCTCTAACCCTTGTGATTGTGGCCCTCACTGTGATCCATGGTATCATATCAAACCACTGGGGTCCAACCATTGTAATAAACCAACTAACCACAAACCATTTTAGGAAATGCTCCATCAAACGGGAAACCAGAGCCAGCAACAGAAAAGTGAAAACAGAATCCGACGACGAACTGGACCTGTTCACACGTCGTATTCTATACGACAAAAAACACTCAGATCCCAAAAAATGCCACCAATGCCAGCAAACCTTCCCCACCATCAAATCCTTGCAAAAGCACAGAAAACTAGAATGTCTTGATTTAAAACCTCTCATCAAGAAAACCAGAATACCTTATAAAGATCTAGTACACAAGTGCAACACTTGCGACCTGATTTTTGATACTTTGAAGTTGCTACGCAACCATAAAAGATCCACACATAAGCGTACCGACGTGGTGGACATGGAGGAGGAGCCCACGTACAAACTAGACGAGATCCAGGATCTGTACATTTGCTCAGTATGCTCGGCAGAGTTCCAGCTTCAGTCTGAGGTGGTAGAACACGTCAAAAGCCACAAGGTTGTGATAACGTGTGACCAGTGTCAGAAGAATTTTCCTAACTACTTTGATCTGGGCATGCACAGAGTCAGTCACAGCAAGGACAAGCACATCAGGTGCCCCCTGTGTTCGTACGTGTCCACCAACTTGAACCCCTACAGCTTCAAAGCCCACATCAACTACGTGCATCTGAAAAAGTTCCCTTTCTACTGCAAGGAGTGCGGCAAGGGGTTCAAGCATCAGAAAACCTACAACGAACACTTGAACTCCCACAAGGGCATGAAGCCCTACATCTGTGTGGTGTGCTCCAAAGGGTTTACCTATCAGAAGTACCTTAACGTCCACCAAGTTAGAAATCACCAGGTGGGCACCACAGGCAACAAAATCCAAAACGAATGTCGCTCCTGCAACCGGTACTTCTACAAGCCAGAGGATCTGGACAAGCACATGGAGTCTTGTTACAAACGCATCAAAAAGCCCAAAAGTCTTACTCCTGCCAAGGCTTTCTTGTGCGACTCCTGTGGGCAAACCTTTACGGAGAAGGCCAAGCTGGTGGAGCATTTGAGGGTGCACAAGGGCGATCTGCCTTATGTGTGTACTTGGTGTGGAAAGAAGTTTCCTGTCAAGTCATATTTGAAGACCCACGAGAGGGTACACACGGGGGAGAAGCCGTATTCTTGTGAGTTTTGCGGCAAGAGGTTTGCTCAGCATGCGCCTTTCAGGGTACATAGGCGAACCCACACAGGTGAACGTCCCTACGTCTGCGACTTCTGCTCCAAAGGGTTCACCACGAACCAAGGACTGAAGCTGCATAAGAAAAATTGCCAGGATAATCAGTTTGGTAAAATGTTGATCGTTGATGAGTGCAAGCCAGAGTACATTATAGAGACGGAAGCTGGCTTTGATGTGTTTACCTAG
Protein Sequence: MKPWARGPLTLVIVALTVIHGIISNHWGPTIVINQLTTNHFRKCSIKRETRASNRKVKTESDDELDLFTRRILYDKKHSDPKKCHQCQQTFPTIKSLQKHRKLECLDLKPLIKKTRIPYKDLVHKCNTCDLIFDTLKLLRNHKRSTHKRTDVVDMEEEPTYKLDEIQDLYICSVCSAEFQLQSEVVEHVKSHKVVITCDQCQKNFPNYFDLGMHRVSHSKDKHIRCPLCSYVSTNLNPYSFKAHINYVHLKKFPFYCKECGKGFKHQKTYNEHLNSHKGMKPYICVVCSKGFTYQKYLNVHQVRNHQVGTTGNKIQNECRSCNRYFYKPEDLDKHMESCYKRIKKPKSLTPAKAFLCDSCGQTFTEKAKLVEHLRVHKGDLPYVCTWCGKKFPVKSYLKTHERVHTGEKPYSCEFCGKRFAQHAPFRVHRRTHTGERPYVCDFCSKGFTTNQGLKLHKKNCQDNQFGKMLIVDECKPEYIIETEAGFDVFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -