Orus030453.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Orchestes rusci
Gene Symbol
RREB1
Assembly
GCA_958502075.1
Location
OY293306.1:45409435-45414150[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.3e-06 0.00037 22.4 1.3 1 23 71 93 71 93 0.99
2 16 0.00014 0.022 16.8 0.4 1 23 106 128 106 128 0.98
3 16 2.1e-05 0.0034 19.3 3.5 1 23 134 156 134 156 0.98
4 16 0.19 30 6.9 0.2 1 23 198 222 198 222 0.86
5 16 0.012 1.9 10.7 1.2 2 23 228 249 227 249 0.96
6 16 0.00033 0.053 15.6 0.7 1 19 292 310 292 312 0.96
7 16 0.072 12 8.2 0.1 1 23 410 432 410 432 0.96
8 16 0.0001 0.017 17.2 1.0 1 23 441 463 441 463 0.98
9 16 0.00083 0.13 14.3 3.1 1 23 469 492 469 492 0.97
10 16 0.00049 0.08 15.0 3.0 1 23 774 797 774 797 0.97
11 16 0.00012 0.019 17.0 0.4 2 23 966 987 965 987 0.97
12 16 0.13 20 7.5 6.3 1 23 993 1016 993 1016 0.97
13 16 0.42 68 5.8 4.4 1 20 1043 1063 1043 1067 0.93
14 16 0.14 22 7.4 3.6 1 23 1112 1135 1112 1135 0.96
15 16 0.012 2 10.6 0.2 3 23 1180 1200 1178 1200 0.94
16 16 0.0075 1.2 11.3 5.9 1 23 1206 1228 1206 1228 0.98

Sequence Information

Coding Sequence
ATGCAAGGAGTAGTGTTCACACCTGAAAATCCCCAGCAAGGCTCTCCTCCTCCCAACAACGTGATGGCAACCAAAATGGAAGAATCCCTGGACACCAACCACATCAAAGACCAAAACAAAACCGACTCCGGCATCTTCTCAGCAACCCCATCCATGGACCAAACCTGCGACAGCGACAATCGCAGCGACTGCAGCTCCCCCGAGCGCAAATACGTTTGCCCCATCTGCGACAAAATGCTCACCTCCCAACACAACTTTACCCTCCACATCAGATCTCACAACAACGAGGGCGAAGTCCAGGAAACAGACAAAGGCTTCACTTGCAGAATCTGCCAAAAGGTCTTGAGCTCCAGCAGTAGCTTGGATCGACATGTGTTGGTGCACAGTGGAGAAAGGCCGTTTGTTTGCAAGTTTTGCGGTGATACTTTTACTACTAATGGTAACATGCATCGCCATATGAGGACCCATTCTGGTAACTATGAGTCCGATGGGAGTAGTGATAGTGGGAGGAGTGTGGAGtataacaacaataataataacaagcGCAAGCTGGAGGTTGACGAGGTCCCTGCTAAGAAACACGAGATGATGTTCAGCTGCCCTTTGTGTCAGCGTAGTGATTTCACTTCCAAAGACAACCTGGACGCCCACTTGGCAGACAATCACCCGGAGTACCCATCTAAGTGTTCAGAATGCCAGCAGGTGTTCCCCAACAACCACCTTCTCGGCCTGCACAAGCAAGAGCATTCCACCACCAAACAAGTGGTGGGGTTTGGTGACCTCACCTTCATGGATTTCTCCAGTGAAAAGTTCCCTCACATTGCTCGCAGGGAGTGCGAGTTGAATGTCCATAAACCACTAGCAGGGCTCCACTTTCAATGTTCCAAGTGTACCAAGGCTTTTCCCAGCTCCAGCTCGTTGGAAATGCACTTTACTGGCTGCCAGGTTGTCAACCTGGTAAAGAACATGTCTGAGGATGAAATCCGCAGGGCCGAGTTCTTTGCTAGATTGAACCTGAAAGACTCTGCAGCTGGGAGTAAGCTTAAAGAGCACCTGTCCAAGGACTCCGGCAAGGATCTGGCAGATATTCAGTCGATTTTGTCCAACATCAACATGCCAAAGCCCCCCGTTGATACTAGCAACGACTCCATCAAGGACCAGGAGGAGGATCAAGAATCCTACTTCAAATTTGCACAAGAGTTTCGCAAAATGAAGATGCGCGGGGAGTTCCCTTGTAGACTGTGTACTGCAGTGTTCCCCAATTTGAGGGCTCTGAAAGGGCACAATAGGGCCCACCTCAGTGGCAACAATAACGGAACGTACTACTGCAACATGTGCCCTCATTCGTCCATGGACAAGGGGGCGCTGATTCGCCACATGCGGAGCCACAATGGAGATCGTCCTTATGAGTGCTCGTTGTGCAACTACGCGTTCACTACCAAAGCCAACTGCGAGAGGCATTTGAGGAATCGACACGCCAAGACCACCAGGGAGGAGGTGAAGAAGAATATCATTTACCATCCCAGTGAGGACCCTACTAATGATGAACTTAACAAACTGACAATGGAGGATAAGAAACTGGATATAGACAAGTGTTCCACTCCGAAAAAGAATGAGGTTACCTTTCCCACGCCCATGTTGGTGCCGGACCTGCAACCACTAAAGCCAACCAAACCATTTAGTAATTTGGAGTTTATACGTGGGGATACTGAGAGGTTTCCTCCCTTCTTGCCTCAACCGTTCAACTTATCTTGTAAACCTCCCGTGCAAATACAGGTGAAGCCCTTTGAAGCGCTGCGCCAGCCACGCTATGAATCCGAGGATGATTATTACGAGGAGGAGGATGATGTTGAAGAGCCCATGGAGGCCTTGGACTTGAGCAAAAAGAAGGTTGAGGAGCCACAGCCGCAAGATCTCAGCAAAAAAATCGAAGTGGAAGCACCTAGGGTGGTTCCTATTGTCAACGAAATGTTTGCCCAGCAACTACTAAAAGGGCCTACAGCCTTATATGCCAGTCAACTGGCTAGTCTATATAGAAACGGCTTTCCCAACTGGGGTTTTGGAGTTAATCCTTTGTTATTCCAAGCATTGCCCCCACTACCAACCCCGGATGTTAAACAGCGCATTCAACTTTGCGGAGGCTCCCTCATTCCGCCGTTGAAAATTCCCGAACCCcctccaccaccaccaccaaaGGAAACTTTTCAACCAATCGACGATGAGGACAAACTGGACCAACCCAACTCTGTCAAAATGGTAATCAAAAACGGAGTTCTGATGCCCAAACAAAAACAGCGGCGATACAGAACAGAACGTCCCTTCAcctgtgaacattgttcagccAGGTTCACGTTGAGGTCCAACATGGAGAGACACATCAAGCAACAACATCCGCAGTTTTGGTCACAGCGTCAACGAGGTGGGTTGTTGACTCAACCAGGCCGCAAACCATCGTACGAAATGCACGAGGATACCAACGAGAAGCTGCGCTATGCTTTGTTGGCACAGCAATTTAGGGTGTTTACTCCGCAAGATAAAAAGGAGGAGGATGAAGACGATTGCGCCCTGGTAATCGACGAAAATGACAACAAGACTGAGGAGCTGGAACGCGGGAGCCTGCTCCAACAACGGCTGGATGGGAGGAGTGAAGAGGACTTGGTGCCTGTAAGTCGCCTATTGGACAATGCCTCTCAGCAACCGTTCAAAGAGTACTTCAAGCGGGATGAGGATCAGGACATTGATGTTGTCAGCGATGAAGAGGAGGGGGTGATTGCCAGCGGCAGCACCAGCGAGGGGAATGTGTCTGGAACTGACGATAACAGATCTGAATCAGACAACCACAACTCATCGCCTCCAAAGAAGAAGTCAGCCTACTCTCTGGCACCAAACCGCGTCAGCTGCCCTTATTGCAGCCGCAAGTTCCCATGGTCCTCCAGTCTGCGCCGCCACATTTTGACCCACACCGGGCAAAAGCCCTTCAAGTGCAGCCACTGTCCTTTGCTGTTCACCACCAAGTCCAACTGTGACCGCCACTTGTTGAGGAAGCACGGCAACTCCGCCACCACCATTGTCACCAGTGAGGCCAACAATGTTAACTTTCTGATGAGGAACGTTCCGGAGCGGCCCTTCAAGTGCAGTAGCTGTCCTAGCAGCACTTTTAGcacttattcaaatttaaaaaagcaCATCAGCTGCAAGCATAACTGCGCCGATGACATCAAGGCCCAAGGCTATGAAGCTGGCAGTAGTGAAGATGAAAAGAACCAGGATTGGGAGAGTCAGATTAATTACACCAAGGTGGTTGTTAACGAGCCAATTCACTCGGATCTGCCTTTTAAGTGTCATCTGTGCGAAAGCTCGTTTTCTGAGCGCCACCAGGCTTTGGACCATATTCGTGATAAACATGCCTCAGAATATGATCTGCTGATGTCCAAGAATGCACTGGACGTCAACGCAACCACCCCTGATGAGCACCACGAGGAGGAGGACTCAGAAATTCGCGGAAAGTTCCCTGACTACTCTAACAGGAAGGTTATTTGTGCATGGTGCATGCGCCGTTTTTGGTCAGCTGAGGATCTCAGAAGGCACATGCGCACTCATACAGGGGAGCGGCCGTTTTCCTGCGATATTTGCCGCAGACGCTTCACGTTGAAGCACAGCATGCTGCGGCATAGGAAGAAGCATAATGGTAACTGTCAGAGTCAGAGTGACGAGGATCAGAAGAAGAGTGACGAATCTGATGTTCCAGAAGGCGGGGATTTGATTAGCAATCTCTTAGGGTTGCGCGATAGGAGCTTGATTGATAAGGTTTTGGATGCCACGTCAGCGGATGATGCGGCCAAGTTGTTGGGGGTTAAGAATGGGGTTAAGGAGTAA
Protein Sequence
MQGVVFTPENPQQGSPPPNNVMATKMEESLDTNHIKDQNKTDSGIFSATPSMDQTCDSDNRSDCSSPERKYVCPICDKMLTSQHNFTLHIRSHNNEGEVQETDKGFTCRICQKVLSSSSSLDRHVLVHSGERPFVCKFCGDTFTTNGNMHRHMRTHSGNYESDGSSDSGRSVEYNNNNNNKRKLEVDEVPAKKHEMMFSCPLCQRSDFTSKDNLDAHLADNHPEYPSKCSECQQVFPNNHLLGLHKQEHSTTKQVVGFGDLTFMDFSSEKFPHIARRECELNVHKPLAGLHFQCSKCTKAFPSSSSLEMHFTGCQVVNLVKNMSEDEIRRAEFFARLNLKDSAAGSKLKEHLSKDSGKDLADIQSILSNINMPKPPVDTSNDSIKDQEEDQESYFKFAQEFRKMKMRGEFPCRLCTAVFPNLRALKGHNRAHLSGNNNGTYYCNMCPHSSMDKGALIRHMRSHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTREEVKKNIIYHPSEDPTNDELNKLTMEDKKLDIDKCSTPKKNEVTFPTPMLVPDLQPLKPTKPFSNLEFIRGDTERFPPFLPQPFNLSCKPPVQIQVKPFEALRQPRYESEDDYYEEEDDVEEPMEALDLSKKKVEEPQPQDLSKKIEVEAPRVVPIVNEMFAQQLLKGPTALYASQLASLYRNGFPNWGFGVNPLLFQALPPLPTPDVKQRIQLCGGSLIPPLKIPEPPPPPPPKETFQPIDDEDKLDQPNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGGLLTQPGRKPSYEMHEDTNEKLRYALLAQQFRVFTPQDKKEEDEDDCALVIDENDNKTEELERGSLLQQRLDGRSEEDLVPVSRLLDNASQQPFKEYFKRDEDQDIDVVSDEEEGVIASGSTSEGNVSGTDDNRSESDNHNSSPPKKKSAYSLAPNRVSCPYCSRKFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTIVTSEANNVNFLMRNVPERPFKCSSCPSSTFSTYSNLKKHISCKHNCADDIKAQGYEAGSSEDEKNQDWESQINYTKVVVNEPIHSDLPFKCHLCESSFSERHQALDHIRDKHASEYDLLMSKNALDVNATTPDEHHEEEDSEIRGKFPDYSNRKVICAWCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNGNCQSQSDEDQKKSDESDVPEGGDLISNLLGLRDRSLIDKVLDATSADDAAKLLGVKNGVKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-