Orus030164.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Orchestes rusci
Gene Symbol
-
Assembly
GCA_958502075.1
Location
OY293306.1:41008942-41043260[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00072 0.12 14.5 0.2 1 23 335 357 335 357 0.94
2 12 2.2e-05 0.0036 19.3 1.6 1 23 365 387 365 387 0.99
3 12 0.00024 0.039 16.0 0.7 2 23 395 416 394 416 0.97
4 12 1e-05 0.0017 20.3 0.7 1 23 422 444 422 444 0.99
5 12 2.7e-05 0.0043 19.0 3.0 1 23 451 473 451 473 0.99
6 12 0.00017 0.027 16.5 2.1 1 23 479 501 479 501 0.96
7 12 3e-05 0.0048 18.9 0.1 1 23 507 529 507 529 0.98
8 12 1.4e-06 0.00023 23.0 1.3 1 23 535 558 535 558 0.96
9 12 1.8e-05 0.0029 19.5 3.5 1 23 564 587 564 587 0.96
10 12 0.00011 0.018 17.1 2.6 1 23 593 615 593 615 0.99
11 12 0.00013 0.021 16.8 0.4 1 23 621 643 621 643 0.94
12 12 0.0028 0.45 12.7 0.7 1 23 649 673 649 673 0.93

Sequence Information

Coding Sequence
ATGACTGGGTCAACACAAGCCAGCTTATGTCTTATATGCAACGCCAGTTGTCTATCACTTAGAAACTCTATACAAGTATTCACGGCTGTAAGTAGCATCCTCATATCGTGCTTCGTCCTCCACAGCACCTGTCTTTTCCAGCATTCGCAGCCTGACGAAGTCCACCTGCCTACGGTGCTGGAACAGCTCTTGGAAAAACCAATTACCAACATAACAGCTCATTCTTCGGTAGTCTGTAAAAAATGCTATAAACTCTTAGTAGAATTTGATGAAATACAATCTAGAGTGACTGATATTAAAACCGAAATATCGAATCATTTTCTGTGTACTTTGGAGAAGCACGAGCAAGGACAGGATGGTGAACATGAAGAAAGAACAGGAAAAACGATACAAGTCAGATCTGTCAATAATTTCATCACCAAGCAGACAGTTTCGGGAAAGATAGGAAAGCAAGAGATGCTTCCTAAAACTATTTTAGATATTCCTTCTAGTGATGATGATTTGAGTCAGGTAGGTGATAGACCACTCCAGGAAATCGAGGATATTGAGATGGAGTTGGAAAAAATCCACGAAGAAGGGGAAAATGTCGGTAACGAACATACAGGAGGCCAGTCTGTTCATTCCTTTGATAATTCAGACTTGGAAGATGCAGAAAGAAACATTGACATGACAGGAAAAATTCAGTACTTGAAAGTAAACATGGAAACACAAAAATCCGAACTAATGACAGTGGAGGCTTCACCAGCAGATACAGTTATCACGGACCAAGAAAGTAAACGTCCAaacattcttaaaaaaaagTCTCCAAATATTGAACTGGAGAATATCATTATACAGGAGCCTGTAGATAAGTTCCGAAAAATGAATGAGAGCACTGAAGAACCTATTGTACATAGAGAGGGAGACCTGTATACTTGTTTAGTATGTGATGGTGAAACTACGGTTGCCGGAGCAGCAAAAGCCATTATTGCTCATATGCGCGAAGCCCATCAACTGCGTCTGTACATTTGTGATGTTTGTGGTCAGGAGTTCAGAAAAAGAAATTTACTTTCACAGCACGTGGATGAACACGTAGCTAATGAAGAGGGTGATTTCCAATGCGAAGTTTGCAATAGGATATTCACGAATCTTAGACTATTCAGGATACATAGAagAATGCATCTTCCACAAACCAAATTCTGGGTTTGTGTGCAATGTAAAAAGAAATACTCTAGTAAAAATTTACTAGATGAGCACATGAACACGCACTTGGGAGTACGACCATATGTTTGTACGATATGTTGGAAAGGATTTGCCAGTAAATACACTTTCAGAGCTCATGAAAAAACCCAtgagacaagaccgagaccattCAAATGCGAGCAATGTGGAAAATCCTTTTTGAGTCAACACAATCTGATACAGCATGAAAAAACCCACTCTGGCATAAAAGACTTTCAATGTCATCTGTGTGACAAGCAGTTTGGATCACTACACAATCTCGAGGTTCACTCCATAGTTCATACAGGCTATAAACCATTTATTTGTGGACTATGTGGCAAAGCCTTTGCCAGAAAAGCTGAGATTCGAGATCATGAAAGAACTCATACAGGTGAACGGCCATTCCAATGTGAGTTTTGTGGAGCCACATTCAGTCAGAGATCAAACCTTCAGTCGCATAAAAGGGCAACTCATTATGATGATAAACGATATAGATGCGAGATTTGCAACAAATGTTTCAAACGTCGAAGACTCTTAGATTATCATATGAAAGCAGTTCATACGGGAGAAAGACCTTACAAGTGCGACGTTTGCGAGTCCACATTTGTCTATCCGGAACATTATAAGAAACATAGAAGAATACACACTGGAGAGAAGCCCTATCTATGCGAAGTATGTGGAAAAGCATTCAACTCTAGAGACAATAGAAACGCACATAGATTTATCCATTCAGACAAAAAGCCATACGAATGTCTTGATTGTGGAGCTGGTTATATGAGAAAGCCTCAACTCTATCAGCACATGCACACTCAAAATCATGTAAATGATACCATTGTGATTAATCAACCTAGATTGACTTTAGACGAGAAAGTCAGTCTAGGAAATGAAAGATATTTGGTAACGATGGACTCTGATGCCAAAGACGTCATGGATGCAGGAGAAGACTCGGACAATATGATGTCAACCAGTCAAAagatcaattttgaagaaagttCGGAGAATGAGGAACAGGGTGAAATTATGAATGAGATACAGCAGGCCATAACAGGAACAGGCGAAGAAGGCGACTACGAGGAAGTACTCACTGCCGATGCTTTAACAGGCGAAACGCAAATCATAGAAACGGAAGATGGTCCAGTTCAACTCATGAAAGTGATGATTCCGAATGAAAATGGCGAACAGGAGGAGGCATGGATCAAAATTGTACCAGATACGGATTTCGAAGAGCTGAAACCAATGGAAGGAGAAGCTTCTTGA
Protein Sequence
MTGSTQASLCLICNASCLSLRNSIQVFTAVSSILISCFVLHSTCLFQHSQPDEVHLPTVLEQLLEKPITNITAHSSVVCKKCYKLLVEFDEIQSRVTDIKTEISNHFLCTLEKHEQGQDGEHEERTGKTIQVRSVNNFITKQTVSGKIGKQEMLPKTILDIPSSDDDLSQVGDRPLQEIEDIEMELEKIHEEGENVGNEHTGGQSVHSFDNSDLEDAERNIDMTGKIQYLKVNMETQKSELMTVEASPADTVITDQESKRPNILKKKSPNIELENIIIQEPVDKFRKMNESTEEPIVHREGDLYTCLVCDGETTVAGAAKAIIAHMREAHQLRLYICDVCGQEFRKRNLLSQHVDEHVANEEGDFQCEVCNRIFTNLRLFRIHRRMHLPQTKFWVCVQCKKKYSSKNLLDEHMNTHLGVRPYVCTICWKGFASKYTFRAHEKTHETRPRPFKCEQCGKSFLSQHNLIQHEKTHSGIKDFQCHLCDKQFGSLHNLEVHSIVHTGYKPFICGLCGKAFARKAEIRDHERTHTGERPFQCEFCGATFSQRSNLQSHKRATHYDDKRYRCEICNKCFKRRRLLDYHMKAVHTGERPYKCDVCESTFVYPEHYKKHRRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLDCGAGYMRKPQLYQHMHTQNHVNDTIVINQPRLTLDEKVSLGNERYLVTMDSDAKDVMDAGEDSDNMMSTSQKINFEESSENEEQGEIMNEIQQAITGTGEEGDYEEVLTADALTGETQIIETEDGPVQLMKVMIPNENGEQEEAWIKIVPDTDFEELKPMEGEAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-