Basic Information

Insect: Orchestes rusci
Gene Symbol: -
Assembly: GCA_958502075.1
Location: OY293304.1:85059339-85066130[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00026 0.042 15.9 0.0 2 23 108 129 107 129 0.96

2 10 0.0015 0.24 13.5 0.3 3 23 142 162 141 162 0.97

3 10 0.00038 0.062 15.4 0.1 2 23 184 205 184 205 0.97

4 10 1.7e-06 0.00028 22.8 0.4 3 23 227 247 226 247 0.97

5 10 0.00048 0.077 15.1 0.1 1 23 266 288 266 288 0.98

6 10 1.7e-06 0.00028 22.8 0.4 3 23 310 330 309 330 0.97

7 10 5e-05 0.0081 18.1 0.1 1 23 349 371 349 371 0.98

8 10 4.6e-06 0.00074 21.4 0.2 1 23 393 415 393 415 0.99

9 10 0.00087 0.14 14.3 1.0 1 23 455 477 455 477 0.98

10 10 1.1e-05 0.0017 20.3 0.4 1 23 506 528 506 528 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00026	0.042	15.9	0.0	2	23	108	129	107	129	0.96
2	10	0.0015	0.24	13.5	0.3	3	23	142	162	141	162	0.97
3	10	0.00038	0.062	15.4	0.1	2	23	184	205	184	205	0.97
4	10	1.7e-06	0.00028	22.8	0.4	3	23	227	247	226	247	0.97
5	10	0.00048	0.077	15.1	0.1	1	23	266	288	266	288	0.98
6	10	1.7e-06	0.00028	22.8	0.4	3	23	310	330	309	330	0.97
7	10	5e-05	0.0081	18.1	0.1	1	23	349	371	349	371	0.98
8	10	4.6e-06	0.00074	21.4	0.2	1	23	393	415	393	415	0.99
9	10	0.00087	0.14	14.3	1.0	1	23	455	477	455	477	0.98
10	10	1.1e-05	0.0017	20.3	0.4	1	23	506	528	506	528	0.98

Sequence Information

Coding Sequence: atgaaaattagccCGATACCATTTATAGGAGCCGAGCCACAGCTTAAAAACAAATCAGCTAGAACACTCTCGGCGGCACCTTTGATCTGGCCGGCCAGGAATTCGTTATCATCACCAGCAACCATCAGAAACTATGGGGATTATCCAGTCTACGAAAATGATTACGGCTGTCCGGAGTCAGATCCAGAATCTTCCAAAGATCGTGTTACGTTACCATCACCACCATCTATAAGAAACTATGAAGATTATCCAGACTATGAAAATGATTACGGCTGTCCTGACGCAAATCCAGAATCCTCCGAAGATCGGGTATTCCATATACCGTGTGGTGAATGcggaaaattgttcaaatcagGTGCCGGATTAGCTAGTCATATGAGACTACATAAACAACAGAGATTTTCAAGTCCAACAACAAATATCTGTTCCAAGTGTGGAAAAATATGTGAATCCGATGCAGGTCTGGCGAGTCATATGAGGGCACATGAAAGGGAGTCGGCTTCATCGATAAGTTCATCAGTGCAGAAAAGCCCGTCCAAAACAGAAAATGTATGTCCAAAATGTGGCAAATCTTGCGCCTCTGGGGCAGGTTTAGCAAGTCATTTGAGGGCACATGAAAGGGATACTGCTCCATCAGAAAGTTCATCAGCACTGATTCCGTCCAAGACAAGAAATGCATGTCCCAAATGTGGCAAATCTTGCTCATCCAGAGCAGATTTAGCAATTCATATGAGGGCACATGAACGGGATACTGCTTCAATAAGTTCAACAGTGCTGATTCCGTCTAAAACAGATTATGTATGTCTCAAATGTGGCAAATCTTGCGCATCCGGAGCAGGTTTAGCAAGTCATTTGAGGGCACATGAAAGGGATACTGCTCCATCAGAAAGTTCATCAGCACTGATTCCGTCCAAGACAAGAAATGCATGTCCCAAATGTGGCAAATCTTGCTCATCCAGAGCAGATTTAGCAATTCATATGAGGGCACATGAACGGGATACTGCTTCAATAAGTTCAACAGTGCTGATTCCGTCTAAAACAGATTATGTATGTCCCAAATGTGGCAAATCTTGCGCATCCGGAGCAGGTTTAGCAAGTCATTTGAGGGCACATGAAAGGGATACTGCTCCATCAATAAgtccatcatcatcaacactgTTTCCGTCTAAAACAGATTATGTATGTCCCAAATGTGGCAAATCTTGCGCATCCGGTGCAGGCTTAGCTAGTCACATGAGGTCTCACGAAAGAGGAATAGATCCATCAACTGGATCATCAGTTTGGGGCCAATCTTCAAATACCGTCACAAATTCTTCCCACTTCACCCAAGGTAATAGAAACACTATGAGGGATTATGCAGGTTTCTCTTGTCATGTATGCGGACAAACTTGTCAGTCTGGTGCCGGTTTGGCCAGTCACATGAGAGCACATGAAAGAAGGGACACCATCCCGGCATTTTCAATTCAATCATCCGCTAGATCATATGGTGGTTCATATAGTTCCAGTTCAGGAGGTTTCTCATGCCCTCAATGCGGTAGAAGTTGTTCTTCCGGAGCAGGACTTGCTAGTCATATGAGATCACATAGATAA
Protein Sequence: MKISPIPFIGAEPQLKNKSARTLSAAPLIWPARNSLSSPATIRNYGDYPVYENDYGCPESDPESSKDRVTLPSPPSIRNYEDYPDYENDYGCPDANPESSEDRVFHIPCGECGKLFKSGAGLASHMRLHKQQRFSSPTTNICSKCGKICESDAGLASHMRAHERESASSISSSVQKSPSKTENVCPKCGKSCASGAGLASHLRAHERDTAPSESSSALIPSKTRNACPKCGKSCSSRADLAIHMRAHERDTASISSTVLIPSKTDYVCLKCGKSCASGAGLASHLRAHERDTAPSESSSALIPSKTRNACPKCGKSCSSRADLAIHMRAHERDTASISSTVLIPSKTDYVCPKCGKSCASGAGLASHLRAHERDTAPSISPSSSTLFPSKTDYVCPKCGKSCASGAGLASHMRSHERGIDPSTGSSVWGQSSNTVTNSSHFTQGNRNTMRDYAGFSCHVCGQTCQSGAGLASHMRAHERRDTIPAFSIQSSARSYGGSYSSSSGGFSCPQCGRSCSSGAGLASHMRSHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -