Orus045350.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293311.1:29396989-29406563[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0002 0.033 16.2 0.7 2 23 67 89 66 89 0.93 2 17 1.2e-05 0.0019 20.1 2.5 1 23 102 125 102 125 0.97 3 17 0.0051 0.82 11.8 6.1 1 23 132 155 132 155 0.91 4 17 4.7e-05 0.0076 18.2 4.8 1 23 168 191 168 191 0.98 5 17 0.00032 0.051 15.6 6.4 3 23 200 221 198 221 0.98 6 17 0.0011 0.18 13.9 3.6 1 23 228 250 228 251 0.95 7 17 2.5e-06 0.00041 22.2 3.5 1 23 258 280 258 281 0.96 8 17 7e-06 0.0011 20.8 3.6 1 23 288 311 288 311 0.98 9 17 0.00071 0.11 14.5 0.9 1 23 318 341 318 341 0.98 10 17 5.4e-05 0.0087 18.0 3.2 1 23 350 373 350 373 0.96 11 17 0.023 3.7 9.8 4.1 1 23 380 403 380 403 0.96 12 17 0.29 47 6.3 1.9 1 12 416 427 416 430 0.88 13 17 0.53 85 5.5 0.6 1 13 494 506 494 508 0.89 14 17 1.2 1.9e+02 4.4 0.0 2 12 576 586 575 590 0.86 15 17 0.0012 0.2 13.8 2.3 2 23 661 683 660 683 0.92 16 17 0.00017 0.028 16.5 0.8 1 23 713 736 713 736 0.94 17 17 6.9e-07 0.00011 24.0 2.3 1 23 743 766 743 766 0.97
Sequence Information
- Coding Sequence
- ATGCTGCAGATCGTGGACATGAGTGGGGGAATCAAGTTAACaatcaaagaagaaatacttgaaatcaaagaagaaaaactctTTCTCTCTCCATCTCCCACTAAGGAAGACAGCCCCAATCCCTTCGATATCCAAACAGAAGACTGTAACAACGATGAAGCCAACGAAAAACTACATATGAAGAATCGCGAGGAATTGAGCTGCAACATTTGTCATGCCTCGTTTGCATACCTGAAAGAGTTGAAACGTCATCTTAACGACATCCATGCGATAAACAACTCATATGGATACGAGCGGCCAACGTTCAGATGCCAAGATTGTAGTAAGACATTTGGGAATAAGCTCAACCTGGCAAGACACATAAGGGCATGCCACCCAAAAGAAAAGGTAACATTTGAATGCCATATTTGTGAGAAGAAATTTAAACAGAAGTGTTATATGAAGCAGCATTTCCTGGGGGTCCATTCAGGAAAAAAACGACCGTCACGTCAAAGAGGAACGTTCACGTGCCACGTCTGCAGTAAGACGTTCAATTATAAGAACGGTTTGGCAGAACACATTAGGACATGCCACTCAAAAGAAAAGATAAGTTTTGGATGCCATGACTGTAGTAAGACTTTCCTGTATAGGAGCAATTTGAGAAAACACATTAGGACATGCCACTCAGAAGAACAGATGAAATTTGAATGCCATGATTGTAGTAAGAGGTTCCTGTATAGGAGCAATTTGGCAGAACACATCGGGAGACACCACTCAAAAGAAAAGATAAGATTTAAATGCCAAGATTGTAGTAAGACGTTTAAGTATAAGAACGGTTTGGCGGAACACATCAGGACACACCACTCAAAAGAACagataagatttgaatgtcATGATTGTAGTAAGACGTTCCTGTATAGGAGCAATTTGAGAGCACACATTAGGACGTTCCACTCGGAAGAAAAAATAAGATTCGAATGCCGTGATTGTGGTAAGCAATATAAATGGAAGAGAGATTTGAGAATTCACACTCAGACTGTTCATTCACCGAGCAAACGGCGTCCAACGTTCAACTGCCAAGAATGTAGTAAGACATTCGGGTATAAGGTGAACTTGAAAAGGCACATTGGGACATGTCACTCACAAGAAAAGATAAGCTTTGAATGCTATATTTGTGGTAAGCACCTTAAATGGAAGCATGGTTTGAAAAGACATATTCAGCAGTTCCATCTAGCTAACAAACGAAGAGCAAAAGAACTGGAAACGTTCACATGCCATAACTGTAGTAAGACGTTCGGACGACACAACACTTCAAGCCCCCAGATCCTGGAAATGGGTGGAGGGGTCAAGTTATTAATCGAAGAGGACATACTTGACTTCAAAGAAGACAAGCTCTCCCTTCCCCGAACTTCCACTGAGAAATACAGCACCAATCAGTTTGATTGTCAAACAAATGATAACAACAACGATGAAGCCAACGTGAGAATGCAGCGGCCAATGTTCACATGTCTCGATTGTAGTATGACATTCAGgagACACAATACTCCAATCCCCCAGATCCTGGACATGGGTGGAGGAATCAAGTTGATAATCGAACAAGAAATACTtgaaatcaaagaagaaaacCTCTTTCCCACTCCATCTCCCACTAAGGAAGACAGCCCCAATCCCTTCGATATCAAAACAGAAGACTGTTACAACGATGAAGCCAACGAAAAAATACATATGAAGGACCGCAAGGAATTGAGCTGCAACATTTGTCATGCCTCGTTTGCACACCTAAATGAgaGACACGATACTCCAATCCCCCAGATCCTGGACATGGGTGGAGGAATCAAGTTGATAATCGAACAAGAAATACTtgaaatcaaagaagaaaaactctTCCTCTCTCCATCTCTCACTAAGGAAGACAGCCCCAATCCCTTCGATATCCAAACAGAAGACTGTAACAACGATGAAGCCAACGAAGAAATACATATGGAGGATCGCAAGGAATTGAGCTGCAACATTTGTCATGCCTCGTTTACACACCTAAATGAGTATAAACGTCACGTTAATGATATCCATTCGAAGAACAACTCATGTGGATACAGGCGGCCAACGTTCACATGCCAAGATTGTAGCAAAAAAAGACCAACATGTCAAAGAGGGACGTTCACGTGCTACGACTGCAGTGAGACGTTCAATTATAAGAACAGTTTGGCAAAACACATAGGGGTGTACCACTCAGGAGAACAGATAAGATTTGCATGCCATGATTGTGGTAAGACGTTCCAGTCTAAGAGTAGTTTGGGGACACACATTAGGACTTACCACTCAGAAGAACAGATGAAACTTTAA
- Protein Sequence
- MLQIVDMSGGIKLTIKEEILEIKEEKLFLSPSPTKEDSPNPFDIQTEDCNNDEANEKLHMKNREELSCNICHASFAYLKELKRHLNDIHAINNSYGYERPTFRCQDCSKTFGNKLNLARHIRACHPKEKVTFECHICEKKFKQKCYMKQHFLGVHSGKKRPSRQRGTFTCHVCSKTFNYKNGLAEHIRTCHSKEKISFGCHDCSKTFLYRSNLRKHIRTCHSEEQMKFECHDCSKRFLYRSNLAEHIGRHHSKEKIRFKCQDCSKTFKYKNGLAEHIRTHHSKEQIRFECHDCSKTFLYRSNLRAHIRTFHSEEKIRFECRDCGKQYKWKRDLRIHTQTVHSPSKRRPTFNCQECSKTFGYKVNLKRHIGTCHSQEKISFECYICGKHLKWKHGLKRHIQQFHLANKRRAKELETFTCHNCSKTFGRHNTSSPQILEMGGGVKLLIEEDILDFKEDKLSLPRTSTEKYSTNQFDCQTNDNNNDEANVRMQRPMFTCLDCSMTFRRHNTPIPQILDMGGGIKLIIEQEILEIKEENLFPTPSPTKEDSPNPFDIKTEDCYNDEANEKIHMKDRKELSCNICHASFAHLNERHDTPIPQILDMGGGIKLIIEQEILEIKEEKLFLSPSLTKEDSPNPFDIQTEDCNNDEANEEIHMEDRKELSCNICHASFTHLNEYKRHVNDIHSKNNSCGYRRPTFTCQDCSKKRPTCQRGTFTCYDCSETFNYKNSLAKHIGVYHSGEQIRFACHDCGKTFQSKSSLGTHIRTYHSEEQMKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -