Orus045772.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293312.1:2374379-2381673[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 5.9e-05 0.0094 17.9 0.2 2 23 144 166 144 166 0.97 2 21 4.4 7.1e+02 2.6 1.4 1 21 302 322 302 323 0.93 3 21 1.4 2.3e+02 4.1 6.7 1 23 352 375 352 375 0.94 4 21 0.22 35 6.7 0.1 1 23 408 431 408 431 0.92 5 21 0.00039 0.064 15.3 0.6 2 23 519 540 519 540 0.98 6 21 0.057 9.2 8.5 0.1 1 23 560 582 560 582 0.93 7 21 0.00011 0.018 17.0 0.4 2 23 586 607 585 607 0.96 8 21 0.0025 0.41 12.8 0.4 2 23 642 664 641 664 0.92 9 21 0.00027 0.043 15.9 0.9 3 23 697 718 696 718 0.95 10 21 0.0092 1.5 11.0 0.9 2 23 731 752 730 752 0.98 11 21 0.12 20 7.5 2.4 2 23 769 790 768 790 0.97 12 21 9e-05 0.014 17.4 1.8 1 23 819 841 819 841 0.98 13 21 1 1.6e+02 4.6 0.1 3 23 860 881 859 881 0.95 14 21 7.5e-05 0.012 17.6 0.2 1 23 908 930 908 930 0.96 15 21 0.082 13 8.0 8.5 3 23 939 960 938 960 0.96 16 21 0.03 4.8 9.4 0.1 1 23 976 998 976 998 0.93 17 21 2.9 4.7e+02 3.2 0.0 1 23 1044 1067 1044 1067 0.93 18 21 0.0047 0.75 12.0 2.0 2 23 1078 1099 1078 1099 0.96 19 21 2.2e-05 0.0036 19.3 0.8 1 23 1137 1159 1137 1160 0.96 20 21 8.7e-06 0.0014 20.5 0.4 1 23 1168 1190 1168 1190 0.98 21 21 0.00026 0.042 15.9 0.4 1 23 1210 1233 1210 1233 0.94
Sequence Information
- Coding Sequence
- ATGTCTGCTCGAAGAGTCGATATTGCCAACATTTGCAGGCTGTGTCTGGCTGATGGTGTTGTGTTGAAAAGTGTTCATTTGAGTTGCCATAGTTTGCCGCAAAAAGTGGCGTTGCTTTTGCACATTCAGATAAACAAGAATGACAAACTATCAACCATGGTCTGCAACGACTGCATCATCAGACTCGACACTTGGTTTTCCTACAAAAAACAATGTCACCGAAATCAGAAAAAGCTGGAAGAATGGTTGAAAATAAACGAAATGAACAAAGAACCGAGTTCGGAAGAACCAGATTCTTCTCTTGGTACGCCGGTTAAAGTCGAGTCCACAGACTGCGAAGTGTGCGAAGAAGATCTCAACATCAGCGGATACACAGACGACAATCTGTTTCTGGAGGACATCAACCAATTGGAAACTGAAGACAGCAGACGTTGTCCTGAATGTGGCCGCGTGTTTGGCAGTGTCCAGAATATGAGACGACACCAGAATGTGTTACATTCGAAAAAAGAACGTCGATATCAAATGGCGGAAATCAGTAAACCGCAAGTGAATGGAGTTAAGGAAAGTAGTGTTGAAGATAATGAAGCCAATGATCAGAATATGGACTGTACTGATGATAAACAAATAAGCATCAACGAATCTGTATTGGATGATAGTATAGATCAAGAACCCGAAAATAATGTTGAAGACACCAAAATGGATGAAAAGATGATAGAGTTTGCCGCTGGTTTGAATCTCTTACAAAAAGTTGAATTATCCAAAATGGAGCATAGCTACGTTGAAAAGTGCAAGGCAATGGTGTGTATGTTCCAAACTTTACAATGCGCATGTCACAATGTGCAGCACAAGTCAATGAAAAGCCTTCTGTCGCACCTGCGGGAAACACGACTGTGGTTCCCTCTGTTCACCTGCTATAATTGCATGATATCTCTGACGGACCGATCTACGTATGCCAAACATCACTCCCGATGTCCGCGACCTCAGTATGATGCACTAAAAAAACTGTCagctttgaaaaaaagaacTGACGTTAAATGTAGATTGTATCAGAACTTCAAGTGCAACCGCTGCAAATTTTTGTTTACGTTTCACGAAGATTTTTGTAAACACATTGATGAGGATCACGCGTATGGATCACCGCCATTTTATTGTTCTTGCAGATATGTTTTTGACTCTCTGGACGAGTATAAGAAGCATTGCTATACTAGTTGCATAGTATCGTACTATTGCGATATTTGCTTCGTGACTACAACAACTATAGAAGAGTTCAATCAACATGCACTAGAGGCGCATGACTCTTCAGAAGGCTTTCTACTGTTGCAGGAAAACCATTATATACCCCGCACCACCCCTGTGCGCACTAAGGAAGTGGACTGTGAAGCCAACATCATTGAGGGTAAAAGAGAACgaagaaaatcatcaagagAGGTTGCAAAGTTATACTTTGAAAAAGAAGTGGAACCTGAAGTGGACACTCTAACAACGCGCGATATAATCAAACTACTTCCGATAGATCCACCTCAGACTTCCGAAGGCTGGAGTAAAAAACCAGCCAAGTGTCCGTTGTGTTTCAAAGATTATTCCAGTGTAAGAAACCTGGTCAGACACTATCGCATACACATAAGAAATAAAGAGGTTTCATTGCCGAAAATGGAACATTCGGAAAGTGAAGATACGTTCAGCTGTCCAGATTGCGAAACCAACTATTCGGCCTCAGAGTGGAAACAACATCTAGAAGAAGACCATCCTTTGATACCTTGCAATGATTGCGAAAAGGAGTTTCGATTCCAGACTGACTTGGAACAGCACCGCAACGAGCATTTAACCTTGAAAGTATTTAGAGACTCAAAAAGTCAAGCTTATAGGTCCACTTTGATTACCCCCAAGGTGGAACCCACTGATCTTGAGGATTCCTTGCTGTTGATGTGTGAAATGTGCGATGCTACGTTTGATAACAGAGATGCTCTAACCTCACATAAATTTTCCCAACATGATAGTGCGTCCAGCTATGTGGACGTGGAGGAAGACTCTCCTACAACACCAAGCGAGATGTTTATATCTCAAATGAAAGTAGAAGAAAAGCCATTTTGCGAATATTGCGATAAGGAGTTTTCCAGCACGCGGAGCTTGAGGGAGCACATTGTAAAACAGCACGGGcgtaattttttaaaaccatCAGAATATCCCAAAAAGTGCGAACAGTGTGATAAAGTGTTGTGTTCAGGAGCAGGCTATACAGTTCACATGCAAATGCATCAAAGACTTAACGGGAAAAAGGATCAGCCCAATTCGAAATATCCCAAACAATGTGAATATTGCGATAAAGTGTGCCTTACCGGGGCTAGTTTACATCGCCACGTGCAAATACACGAAAAAGTTACACTGGGCGAGCTGACGAAGGCAAAAGAAGAAATTAATGAATTCACATCTAAATCGGAAGACGAAGAGTCCTACTTCACTTGCAGAAAATGCTTTAAGGTGTTTGCTGCTAAGGGTAAATTAAAAGAGCATATGAGAAGCCATGGAATTACCAGCGATAAATCCTCAAGCCCCAAAGCTAAAAGACGAAAAGTGTTGTGTGACTTGTGTCATGTTGCAGTGGACGGCCCCAAAGAGTTGGCACGTCATAAACGTGACGAACATGCAGATGAATATGAAGATGACGATTCCGATATGGAATCAGACGATGCCACCAATGATTCACTAGAATCAGGAGTCTACTATGCGTGCGACATCTGCGAAGAAAACTTTTCGTCTAGATCAGCATTAAAGGTCCACAAGCAAGAACATTTCAAGGCCAAGTTCAAAAACCACTGTAAACACTGCAAAATCTCTTTCAACTCATTCACCGACTTCACAAAACATATGCACATTCAGCATGGCGAAAGTGCCAAGCccaaatcaaaaaaagttgatcctAAGCCTTTCAAGTGTCCGGTGTGTAGCCGAGGGTTCCAAACAATCGGAGCCATGAACACTCATTATGGATGGCATAAGAGGGTAAGCAATAAAATGAAAGAAGAAACAACTGAAAATACACCACAAGCGACTGCGTCTGCCAAAATGGCCAAAAGAGTGGAAGTAGCCAAGAAAATGGCCGTCAAAAGTGAACCAATTGAAGCACCAGAATTCCAATGTAGTACCTGTCTGGTCGAACTGCCAAATGACACAGCTTTGCAGATTCATATCTTGGAAAAACATGGTGATTACGATGAAATAATGCTGGTGCCAAGATGTAATATTTGTAACAAAGACTTCAACACGCAAGAGGAGTATGACACCCATAAAAAGTTCCACGACTTTTTGGAGCGACAGAAGAACCATCAGATGCAAATGAAAGCCGTGAAGCAAGAATTGCAAACTCCGGTTATACAAAGTTATCAGAGTGTTGTTGAGACACAGAAAAAGTTCCCGTGCAGTTGGTGCCAGGCTGTTTTCAGCAGATCAGACACGTTGAATGGTCATATAAGAAAACACCACAAGGATCATATGAGAACGACTTTTGAATGCGATCAGTGCGACCgggtttttgaaaaacaaagctCGCTGACACTTCATGTGAAGATTCATCAGAAAGCAAAGCCAGTGGGAGTGGCTCCGCCGCCGTCTTCTAGTGGTACCAAAGTGTATGTTTGTTCGCTTTGTAATGAAACCTTCAATTTTCCCAAAGATCTTCGAACCCATACTATTAATGCTCATCCATTTTAA
- Protein Sequence
- MSARRVDIANICRLCLADGVVLKSVHLSCHSLPQKVALLLHIQINKNDKLSTMVCNDCIIRLDTWFSYKKQCHRNQKKLEEWLKINEMNKEPSSEEPDSSLGTPVKVESTDCEVCEEDLNISGYTDDNLFLEDINQLETEDSRRCPECGRVFGSVQNMRRHQNVLHSKKERRYQMAEISKPQVNGVKESSVEDNEANDQNMDCTDDKQISINESVLDDSIDQEPENNVEDTKMDEKMIEFAAGLNLLQKVELSKMEHSYVEKCKAMVCMFQTLQCACHNVQHKSMKSLLSHLRETRLWFPLFTCYNCMISLTDRSTYAKHHSRCPRPQYDALKKLSALKKRTDVKCRLYQNFKCNRCKFLFTFHEDFCKHIDEDHAYGSPPFYCSCRYVFDSLDEYKKHCYTSCIVSYYCDICFVTTTTIEEFNQHALEAHDSSEGFLLLQENHYIPRTTPVRTKEVDCEANIIEGKRERRKSSREVAKLYFEKEVEPEVDTLTTRDIIKLLPIDPPQTSEGWSKKPAKCPLCFKDYSSVRNLVRHYRIHIRNKEVSLPKMEHSESEDTFSCPDCETNYSASEWKQHLEEDHPLIPCNDCEKEFRFQTDLEQHRNEHLTLKVFRDSKSQAYRSTLITPKVEPTDLEDSLLLMCEMCDATFDNRDALTSHKFSQHDSASSYVDVEEDSPTTPSEMFISQMKVEEKPFCEYCDKEFSSTRSLREHIVKQHGRNFLKPSEYPKKCEQCDKVLCSGAGYTVHMQMHQRLNGKKDQPNSKYPKQCEYCDKVCLTGASLHRHVQIHEKVTLGELTKAKEEINEFTSKSEDEESYFTCRKCFKVFAAKGKLKEHMRSHGITSDKSSSPKAKRRKVLCDLCHVAVDGPKELARHKRDEHADEYEDDDSDMESDDATNDSLESGVYYACDICEENFSSRSALKVHKQEHFKAKFKNHCKHCKISFNSFTDFTKHMHIQHGESAKPKSKKVDPKPFKCPVCSRGFQTIGAMNTHYGWHKRVSNKMKEETTENTPQATASAKMAKRVEVAKKMAVKSEPIEAPEFQCSTCLVELPNDTALQIHILEKHGDYDEIMLVPRCNICNKDFNTQEEYDTHKKFHDFLERQKNHQMQMKAVKQELQTPVIQSYQSVVETQKKFPCSWCQAVFSRSDTLNGHIRKHHKDHMRTTFECDQCDRVFEKQSSLTLHVKIHQKAKPVGVAPPPSSSGTKVYVCSLCNETFNFPKDLRTHTINAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -