Orus045333.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293311.1:29197196-29198605[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00011 0.018 17.0 0.7 2 23 61 83 60 83 0.93 2 13 1.6e-07 2.6e-05 26.0 3.6 1 23 96 119 96 119 0.98 3 13 6.6e-06 0.0011 20.9 4.9 2 23 127 149 126 149 0.97 4 13 0.0001 0.016 17.2 4.1 2 23 157 179 156 179 0.93 5 13 2.7e-06 0.00043 22.2 4.4 1 23 192 215 192 215 0.98 6 13 7e-06 0.0011 20.8 2.6 1 23 222 245 222 245 0.98 7 13 0.00011 0.018 17.0 2.4 1 23 252 275 252 275 0.98 8 13 8.1e-05 0.013 17.5 7.7 1 23 282 304 282 305 0.96 9 13 2.5e-05 0.004 19.1 2.6 1 23 312 335 312 335 0.96 10 13 6.8e-06 0.0011 20.9 3.5 1 23 342 364 342 365 0.96 11 13 2.9e-06 0.00047 22.0 6.2 1 23 372 394 372 395 0.96 12 13 0.0025 0.41 12.8 4.0 1 22 402 423 402 425 0.91 13 13 6.3 1e+03 2.1 0.5 12 23 443 456 442 456 0.81
Sequence Information
- Coding Sequence
- ATGCGTGGGAAAATCAAGTTAACaatcaaagaagaaatacttgaaatcaaagaagaaaaaatctcTCCTCCTCCATCTCCCACTGAGGAAGACAGCCCCAATCCCTTCGATATCAAAACAGAAGACTGTTACAACGATGAAGCCAACGAAAAAATACATTCGATGGATAGCAAAGAATTGAGCTGCAACATTTGTCATGCCTCGTTTGCATACCTAAAAGAGTTGAAACGTCATCTTAACGACATCCATGCGATAAACAACTCATATGGATACGAGCGGCCAACGTTCACATGCCAAGATTGTAGTAAGACGTTCAAGTATAAGAGAAACTTGCTGAGACACATCAGGACATCTCACGCAAAAGAAAAGATAAAGCTTGAATGCCATGATTGTAGTAAGACATTCGTGTATAACAAAAGCTTGCTAAGACACATTAGGACATGCCACTCAGAAGAAAAGATAACAATTGAGTGCCATATTTGTGAAAAGAAATTTAAACAGAAGTGTTATTTGAAGCAACATTTACTGGAGattcattttggaaaaaaacgatCGTCACGTCAAAAAGGAACGTTCACGTGCCACGACTGCGGTAAGTCATTCAATTATAAGAACTGTTTGGCAGAACACATCAGGATATACCACTCGAAAGAAAAGATAAGATTTAAATGCCATGATTGTAGTAAGACCTTTAATTTTAAGAACGGTTTGGCAGAACACATCAGGATATACCACTCAGAAGAACagataagatttgaatgccACGATTGTAGTAAGACGTTCCTGTACAGGAACAATTTGGGAGCACACATTAGGACATACCACTCAAAAGAAAAGATAAGGTTTGAATGTCATGATTGTAGTAAGACGTTCAATTGTAAGGGCAATTTGAGAGAACACATTAGGACACACCACTCAAAAGAGCGGATAAGATTTGAATGCCATGATTGTAGTAAGACATTCGGGTATAAGCTCAACCTGGCAGCACACATAAGAGCATGCCACTCAAAAGAACagataagatttgaatgccATGATTGTAGTAAGACGTTCAAGTATAAGAGCGGTTTGGGAGAACACATTAGGGCACACCACTCCAAAGAACAGATAAGATTCAAATGTCATGATTGTAGTAAGACGTTCCAATATAAGAGCACTTTGGCAGAACACATTAGGACACACCACTCGGAAGAAAAGATAAGATTCGAATGCCATGATTGTATTAAGACGTTCAAGTATAGGCGCGGTTTGACAAAACACATCGGGGCATGCCACTCGAAAGAAAAGATAGGATTAGAATGCCATGATAGTGGTGAGCATCAAAACAGGAAAAACGCTTTGAAGCGTCATATTCAGAAGGTCCTCCATTCAGCTGAAAGACCACGAACAGAGAACGTTCACATGCCATGA
- Protein Sequence
- MRGKIKLTIKEEILEIKEEKISPPPSPTEEDSPNPFDIKTEDCYNDEANEKIHSMDSKELSCNICHASFAYLKELKRHLNDIHAINNSYGYERPTFTCQDCSKTFKYKRNLLRHIRTSHAKEKIKLECHDCSKTFVYNKSLLRHIRTCHSEEKITIECHICEKKFKQKCYLKQHLLEIHFGKKRSSRQKGTFTCHDCGKSFNYKNCLAEHIRIYHSKEKIRFKCHDCSKTFNFKNGLAEHIRIYHSEEQIRFECHDCSKTFLYRNNLGAHIRTYHSKEKIRFECHDCSKTFNCKGNLREHIRTHHSKERIRFECHDCSKTFGYKLNLAAHIRACHSKEQIRFECHDCSKTFKYKSGLGEHIRAHHSKEQIRFKCHDCSKTFQYKSTLAEHIRTHHSEEKIRFECHDCIKTFKYRRGLTKHIGACHSKEKIGLECHDSGEHQNRKNALKRHIQKVLHSAERPRTENVHMP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -