Orus045346.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293311.1:29347640-29356230[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.09 14 7.9 0.3 3 22 62 81 60 83 0.84 2 16 1.8e-07 2.9e-05 25.9 2.5 1 23 95 118 95 118 0.98 3 16 1.2e-06 0.0002 23.2 3.8 1 23 125 148 125 148 0.96 4 16 7e-06 0.0011 20.8 1.6 1 23 155 178 155 178 0.98 5 16 2.5e-07 4e-05 25.4 0.8 1 23 185 208 185 208 0.96 6 16 0.00024 0.039 16.0 3.3 3 23 217 238 215 238 0.97 7 16 6.7e-07 0.00011 24.1 3.9 1 23 245 268 245 268 0.96 8 16 0.39 63 5.9 2.2 2 13 277 288 276 291 0.88 9 16 0.03 4.8 9.4 0.9 1 23 351 374 351 374 0.89 10 16 9.4e-05 0.015 17.3 1.2 1 23 381 404 381 404 0.96 11 16 0.44 70 5.8 8.6 1 23 413 436 413 436 0.96 12 16 0.00017 0.028 16.5 1.1 2 23 444 466 443 466 0.95 13 16 7.5e-06 0.0012 20.7 3.4 1 23 479 502 479 502 0.98 14 16 0.0022 0.35 13.0 4.3 1 23 509 532 509 532 0.95 15 16 1.1e-06 0.00018 23.4 4.2 1 23 545 568 545 568 0.97 16 16 9.5e-05 0.015 17.3 1.8 3 23 577 598 575 598 0.96
Sequence Information
- Coding Sequence
- ATGGGTGGGGGACTCCAGATAATGATCAAAGAAGAAATGCTTGAGTTAAAAGAGGAAGAACTCCTTCTCCCCCCAACTCCTAGCAAAGAAGACAGCCCCAATCCCTTCGATACCCAAACAAAAGACAATACTGATGAGGAAGGCAACGAAATTATACATAGGACTGATAGCAAAGTTTTGCGCTGCATCAATTGTCATGCTTCGTTCGCATATCTGGAAGAATTGAGACGCCACGTTGACGACATCCATTTGGAGAACAACCCAAGACACGAGCGGCCATTGTTCACATGTCATGATTGTGGTAAGATGTTCGAGTCTAAGAGTAGTTTGGGGACACACATTAGGACATACCACTCAGAAGAACGGATAAGATTTGAATGTCATGATTGTAGTAAGACGTTCAAGTATAAGAGAAATTTGACAGAACACATAAGGGCATACCACTCAAAAGAAAATACAAGATTCGAATGCCATGTTTGTAGAAAGACGTTCGGGTACAAAAAAGGCTTGGCAGCACACATTAGGACATCCCACGCAAAGGATAAGATAAAGTTTGAATGCCATGATTGTGGTAAGACGTTCAAGTCTAAGGGCGGTTTGGCAGGGCACATGAGAGCATTCCACGCAAAAGAAAAGATAAAGTTTGGATGCCAAGATTGTAGTAGGACATATGGATTCAAAGAAAACTTGAGAAGGCACATCAAGACATGCCACTCGGAAGAGAAGACAAGATTTAAATGTCATATTTGTGGTAAACACTATATACGGAAGGATCAATTGAGGAAGCATATCCAGGAAGTCCATTCTGTGAACACACCTCCAACGATCCCATGTCAAGATTGTAGTAAGACATTCAAATCAAGAGAATGTAATCTAGACATAAAAGGAAGGGCCAAGTTGATCATTAAAGAAGAATCACTTGACTTTAAAGAAGAAAACCCCTTTTTTCCTCAGATTCACATCAAGGACGACAGCCTCAATTCCGTCGAtactcaaacaaaaattgacaatgatgcagcagtcaaaataacatatACAGAGGATGGCAAATTCAATTGTACGATTTGCCAAACCTCGTTTGCATATCTAAAAGAGTTGAAGTTCCACGTCGATAAAGTCCATTCGTGCAAAAGTCCCAAATTCATATGTAGAATTTGCAATAAATTCTTCAAACGAGGATACAGCTTAGAGCAGCATGTTCAGAAGGTCCATTCAGCGAAAAAGCCACCAGCAACCTTTACATGCCACGATTGTTGTAGGACTTTCGTGTATAAACATAGCTTAGTAGGACACATCAAAGCGTGCCACTTGAAAGAAAAGGAAATAATTGAATGTCATATTTGTGGTAAGCAATACACATGGAACCAAAACTTGAAGCGCCACCTCCAGCAAGTCCATTCGGCGAACAAAGGACCTGTATATCAGGAGGAAAGTTTTACATGCCATAACTGTAGTAAGACGTTCTCGGGTAAACAGAGCTTGGAAAGACACATTGAGACGTATCACTCAGAAGACAAAATGAGTTTTGCATGCCATATCTGTGGTAAGCACTATAAACCGGGGCGATGTTTGAAGCGCCATATCAATGAGGTTCATTTGGCGAAGAAACAACGTAGATACGAGTCGGAAACTTTTATATGCCACGATTGTGGTAAGACGTTCGACTATAAAAAGAATTTGGCAAGACATATCGATACATGCCACTCAAGAGGAAAGGCAAGGTTTGGATGTCATATTTGTGGTAAGGACTATAAAGTGAAATATGAGTTGAAACGGCATAGCCAGAAAGTCCATTCAGTGAACGAAAAAAACTAA
- Protein Sequence
- MGGGLQIMIKEEMLELKEEELLLPPTPSKEDSPNPFDTQTKDNTDEEGNEIIHRTDSKVLRCINCHASFAYLEELRRHVDDIHLENNPRHERPLFTCHDCGKMFESKSSLGTHIRTYHSEERIRFECHDCSKTFKYKRNLTEHIRAYHSKENTRFECHVCRKTFGYKKGLAAHIRTSHAKDKIKFECHDCGKTFKSKGGLAGHMRAFHAKEKIKFGCQDCSRTYGFKENLRRHIKTCHSEEKTRFKCHICGKHYIRKDQLRKHIQEVHSVNTPPTIPCQDCSKTFKSRECNLDIKGRAKLIIKEESLDFKEENPFFPQIHIKDDSLNSVDTQTKIDNDAAVKITYTEDGKFNCTICQTSFAYLKELKFHVDKVHSCKSPKFICRICNKFFKRGYSLEQHVQKVHSAKKPPATFTCHDCCRTFVYKHSLVGHIKACHLKEKEIIECHICGKQYTWNQNLKRHLQQVHSANKGPVYQEESFTCHNCSKTFSGKQSLERHIETYHSEDKMSFACHICGKHYKPGRCLKRHINEVHLAKKQRRYESETFICHDCGKTFDYKKNLARHIDTCHSRGKARFGCHICGKDYKVKYELKRHSQKVHSVNEKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -