Orus042832.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293311.1:1405807-1420831[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0015 0.24 13.5 6.1 2 23 31 53 30 53 0.94 2 22 1.8 2.9e+02 3.8 1.5 2 21 61 80 60 81 0.89 3 22 8.7e-05 0.014 17.4 1.2 2 20 114 132 113 134 0.93 4 22 0.008 1.3 11.2 0.7 2 21 144 163 143 164 0.95 5 22 0.00037 0.06 15.4 0.9 5 23 164 183 163 183 0.94 6 22 0.75 1.2e+02 5.0 4.2 1 23 188 210 188 211 0.93 7 22 0.00027 0.044 15.8 4.9 1 23 218 241 218 241 0.97 8 22 0.0014 0.23 13.6 4.0 1 23 295 318 295 318 0.97 9 22 3.3 5.4e+02 3.0 0.9 3 11 328 336 327 342 0.90 10 22 0.00037 0.059 15.4 2.7 1 23 379 402 379 402 0.97 11 22 0.00059 0.095 14.8 4.3 2 23 410 432 409 432 0.95 12 22 1.7e-07 2.7e-05 25.9 1.7 2 23 439 461 438 461 0.96 13 22 5.5e-07 8.9e-05 24.3 3.4 2 23 469 491 468 491 0.95 14 22 3.6e-05 0.0058 18.6 3.2 2 23 499 521 498 521 0.97 15 22 0.033 5.3 9.3 2.9 2 23 529 551 528 551 0.91 16 22 1.3e-05 0.0021 20.0 0.5 2 23 559 581 558 581 0.95 17 22 0.84 1.4e+02 4.9 1.0 2 16 589 603 588 605 0.85 18 22 0.0084 1.4 11.1 3.0 1 23 633 656 633 656 0.97 19 22 2.8e-05 0.0044 19.0 2.1 1 23 659 682 659 682 0.97 20 22 0.082 13 8.0 3.7 3 23 691 712 689 712 0.92 21 22 0.00019 0.03 16.4 2.3 2 23 719 741 718 741 0.97 22 22 4.2e-07 6.8e-05 24.7 0.8 2 23 749 771 748 771 0.95
Sequence Information
- Coding Sequence
- ATGAGGCAGGAATCCGACAGCGAATTCGAAGACCCACAAATGTTCCTCAAACAAGAGATTAACCTGCCAAACCTGGAAAGAGGATCTCTAGAATGCACTTTTTGCCACaaatcttttttcttcaactcGAACCTTCACAGACACGTCCAGCAACAACATTCGGAAATAGACGAGTCCCTCAAGTGCCCGTTCTGTGACAAGCCTTCTCTCTACAAATATTGCCTGGACAGACACGTCAAACGAGAGCCTGCGCAAACACATCGACTGCCAACATTCGGAGATAAGCGAGAGGTTCAAGTGTACGTGGAACGGCAGCACTCAGACGTTAACGAAGTATTGAGGTGTGACTTTTGCAAGAAGACGTTCACGCATAAGATGAACCTGCGCGCGCATGTTGGGCGGCAACCTTTGGATAATAGTGGACAAGTGAAGTGTAGCTTCTGTGATAAACTATTGAAGAATAAGGATGGGTTGTTCAAGCATATCAAGTTCTGCAAAAAATCCTTCAACCGTAAAAGCGACTTGAACTTACACGTTAAATCGCAGCATTTGCAGCAGAGATTCAACTGTGAGTTTTGTGATAAATCTTTGAAGTACAAACATATTATGATTTCGCATGTTAAAATACATCACTCGACTCCGTATGAGAGTTTCAAGTGTGACTTTTGTGATAAGGCTTTTGTGCATAAGCATTATTTAAGCTTGCATGTGAGGGAGAAGCATTTTAGAGATAATTTTTTCAGCTTTGCCACTGTAATCAAGCTAGAACCACTCATTAAACCTGAAGAAAACCTGGAACAAGACCCTCTGAAACTCAAGGAAGACTACGTCGAGATTCCGAATCCCTACATCAAAAATTACCATTGCGATGAATCTGGACACTTTAAATGTACATTTTGCAACAATTCTTTCCGGGACAAGTCCAATTACCGCCCTCACGTCCGTAAAAAACATTCCCAGTCCAAGTTTGACAGCTCCTTCTGTCATTTTTGCAACAAGTTCTTCAAGTTATTCATTAACTGGATCAAAGAAGAACCAACGATCAAAGATGAAGATATTGAAGAATTGCTGGAACAAGAATTGATCCTTGATGATATCAAGAACGACGAACCAACCTACTACGAAATCAACACATTCAAATGTGAATTGTGTGGCAaatctttcaaattcaaaagataCCTGGTGTTTCACATCAAAATGCAGCATTCGAGTAAAGAAAAAACCTTGAAGTGTGACTTCTGTGACAAGTCCTTCAGCCACAAGTACTACGTGTATAAACACGTCAAATATCAACATTTCAATAGCGAAAAACTAACGTGCGAATGGTGTGATAAACCATTCACGCGCAAAAGCAACTTGACTCATCACATCAAAGTGCAGCATTCTAACAACTTCGAAAAACTAGAATGTCCTCATTGTGATAAATCGTTCAAACATACGGACAACTTGCGCAGACATGTCAAAATACTGCATTTGCGGAATTTCGAAAGAATAAAATGTGGGTTTTGTGATAAATTTTTTGACGATAAGTTTCACTTGAATACTCACATCAAGACACAGCATTCGGGCAGTGGTTCGGCGCTGAAATGTGATTATTGTGACAAAACATTCAAGTGTGAACTTTACGTACGCAGGCATATCAAGGCGCAACATTTGGAAAATAACCTGAAATTGAATTGTGAGTTTTGTGATAAGGCTCTCACGCGCAAGGATAATTTGCGCACTCACATCAAAGTGCTACATTCGGAAAATCACGTCAAATTGAGATGTGACTTTTGTGTTAAATCGTTCAATCGTAGGTTCAGTGTGACAAAAAACGATCCCGTAATCGATACAGATCTTCAAATTTCCCTTAAGGAAGAACCACtggacatcaaagaagaaaccTTTCATCCCTTTCCATGTAACTTGTGTCACACTTCCTTCTTATATCAACATGACATGATAAATCACATGCGATTGATTCACCAAAAGTTTCCTTGTGAATTTTGTGACAAGCTTTACAAGACCAAGTCGTATTTGAGCAAACATATCAAGCGACTGCATGCAGATAGTGATTCATCagtgaaatgtattttttgcgACAAGATGTTCAAATGTAATAATTATCTGCGCAACCATATCAGAAGGCAGCATTTGGAAAATGACcggaaaaaatgtgatttttgtgataagaCTTACATGCGCAAAGATCGTTTGCGCATGCACATCAAAACGGAGCATTTAGAAAATCACGTCAAATTGAATTGTGAGTTTTGTGATAAGGCTTTCACGCGCAAGGATAATTTGCGCACTCACATCAAAGTGCTACATTCGGAAAATCACGTCAAATAG
- Protein Sequence
- MRQESDSEFEDPQMFLKQEINLPNLERGSLECTFCHKSFFFNSNLHRHVQQQHSEIDESLKCPFCDKPSLYKYCLDRHVKREPAQTHRLPTFGDKREVQVYVERQHSDVNEVLRCDFCKKTFTHKMNLRAHVGRQPLDNSGQVKCSFCDKLLKNKDGLFKHIKFCKKSFNRKSDLNLHVKSQHLQQRFNCEFCDKSLKYKHIMISHVKIHHSTPYESFKCDFCDKAFVHKHYLSLHVREKHFRDNFFSFATVIKLEPLIKPEENLEQDPLKLKEDYVEIPNPYIKNYHCDESGHFKCTFCNNSFRDKSNYRPHVRKKHSQSKFDSSFCHFCNKFFKLFINWIKEEPTIKDEDIEELLEQELILDDIKNDEPTYYEINTFKCELCGKSFKFKRYLVFHIKMQHSSKEKTLKCDFCDKSFSHKYYVYKHVKYQHFNSEKLTCEWCDKPFTRKSNLTHHIKVQHSNNFEKLECPHCDKSFKHTDNLRRHVKILHLRNFERIKCGFCDKFFDDKFHLNTHIKTQHSGSGSALKCDYCDKTFKCELYVRRHIKAQHLENNLKLNCEFCDKALTRKDNLRTHIKVLHSENHVKLRCDFCVKSFNRRFSVTKNDPVIDTDLQISLKEEPLDIKEETFHPFPCNLCHTSFLYQHDMINHMRLIHQKFPCEFCDKLYKTKSYLSKHIKRLHADSDSSVKCIFCDKMFKCNNYLRNHIRRQHLENDRKKCDFCDKTYMRKDRLRMHIKTEHLENHVKLNCEFCDKAFTRKDNLRTHIKVLHSENHVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -