Orus045332.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293311.1:29166318-29194939[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2e-06 0.00033 22.5 1.4 1 23 19 42 19 42 0.98 2 15 2.7e-06 0.00044 22.1 1.1 2 23 93 115 92 115 0.95 3 15 3.8e-06 0.00061 21.7 1.6 1 23 122 145 122 145 0.97 4 15 0.0019 0.31 13.2 0.9 2 17 153 168 152 169 0.93 5 15 0.00012 0.019 17.0 1.9 1 23 227 250 227 250 0.97 6 15 4.9e-05 0.0079 18.2 1.9 1 23 257 280 257 280 0.97 7 15 5.8e-06 0.00093 21.1 4.1 1 23 287 310 287 310 0.98 8 15 2.5e-06 0.0004 22.3 4.1 1 23 364 387 364 387 0.98 9 15 0.00011 0.018 17.0 1.1 3 23 395 416 393 416 0.95 10 15 0.011 1.8 10.8 2.7 2 20 419 437 418 438 0.93 11 15 0.0001 0.016 17.2 3.6 2 23 449 470 448 471 0.94 12 15 1.6e-06 0.00026 22.9 0.9 2 23 479 501 478 501 0.97 13 15 0.0001 0.016 17.2 1.1 2 23 509 531 508 531 0.94 14 15 0.027 4.4 9.5 1.3 2 23 539 561 538 561 0.92 15 15 8e-05 0.013 17.5 2.1 1 23 566 589 566 589 0.95
Sequence Information
- Coding Sequence
- ATGGACTTGATTGACGAAATCCAGCTCAAAGAAATCCTCAGAGACGAAGCACGATTCaagtgtgatttttgtgataaatctTTCAAGTTCAACGGTAGTCTTAACATACATGTCAAAACAGTCCACTCAGCTGCTGTCAAGGATAGTTTCagaTGTGAAGAAATTCAGAATTTATTGGGAAACATCAAAGAAGAACCACttgacatcaaagaagaaacgATGTACTTGACTGACAAAATGCAGCTGGAAGAAATCCTCAGCGACCAAGCAGAAATCAAGTGTGATGTCTGTGATAAGTCTTTCAAGCACAACGGCAGTCTCATCAAACATGTCAGCAGAGTTCACCCAATAGTGAACAAGAGTTTCAgatgtgaattttgcgacaagactttcaaggtTAAAGACTACTTGGAAAATCACGTTAAAAGAGTGCATTCGTGCAATGTTGAAATTTCAGAATGCGAGTTTTGTGATAAGTCCTTTAAACATAAAGACGATCTTAAACTAAGTATTGGAAATGTGTTCAACCCTAATCAGCAAACTTTCAGACTTACAACATATATATGCGAAGAAAATCAACAGATCTGGagagacatcaaagaagaagaaccacttgacattaaagaagaaatTATGGACTTGAATGATGATCAAACAGGACTCAGCAACCAAGCAGAATTCAAGTGTGATTTCTGTGCTAAATCGTTCAAGTTCAAAAACAATGTCAACAGACATGTCAAAATAGTCCACACAACAGTGAAGGAAAGTTTCAACTGTGAATTTTGCGGCAATACTTTCAAGAACAAACAATACTTGAATGATCATGTTAGAAGACTACATGCGCTCTTTTTTGAAGTATTCAAATGCAAGTTTTGTGACAAGACCTTCAAGAACAAACAATACTTGAATGATCATGTTAAAAGACTACATCCGCCAATTCTTGAACTATTTaaatgcgaATCAACAACTCATTATCATGAAGAGACTCGAAATATCCTGGGTGAAATCAAAGAAGAAGATCCACTGGACATTAAGGAAGAAACATTGGACTTGAATGATGATGAAATGCAATTCAAAGACAAAGCACGATTCAAGTGTCATTTTTGTAATAAACCTTTCTCGTCCAAACGTAATGTTAAAAGACATATTCTAACAGTTCACTCACTCAACAAAAGTCTCGACTGTGATTTTTGCGAAAAGACTTTCAAGAATGAACAGTACCTGAGAACTCATGTTAAAAGAGTACACCTATTAAAATGCAAGTGTTGTGACAAGTCCTTTAGGAACAAAGACGTCTTGAAAAATCATGTCACATGTCAACATTCAGAAACTCTCGAAAAACTTACCTGTGATTATTGCCAAAAGTCGTTTGAAAAGAGAAGAAATCTCTCTCAACATGTCAAATTACATCATTCAACCAGTGATGACACAGTCACGTGTGAAATCTGCGGCAGGGCTTTCAAGCATCAACAGTACCTCAGAATTCATATTAAAAGAGTACATCCGCTTGTACTTGAGCTATCAAAATGCGAGTTGTGTGACAAGACCTTCAGAAATAAAGAAGCCTTTGGCAGACATGTCAAATTTGAACATTCGGAGGCTAGTGAAAGTTTGACCTGCGAACTTTGCCAAAAGTCATTCAAGCTGAGAAGTAGACTTAACTTTCATGTTAAAGTTATGCACAGTAATGAAAGTTTCAACTGTGgattttgcgacaagactttcacaaatgaagtttatttgaaaacccACGTTAAATATAAGCATACATGA
- Protein Sequence
- MDLIDEIQLKEILRDEARFKCDFCDKSFKFNGSLNIHVKTVHSAAVKDSFRCEEIQNLLGNIKEEPLDIKEETMYLTDKMQLEEILSDQAEIKCDVCDKSFKHNGSLIKHVSRVHPIVNKSFRCEFCDKTFKVKDYLENHVKRVHSCNVEISECEFCDKSFKHKDDLKLSIGNVFNPNQQTFRLTTYICEENQQIWRDIKEEEPLDIKEEIMDLNDDQTGLSNQAEFKCDFCAKSFKFKNNVNRHVKIVHTTVKESFNCEFCGNTFKNKQYLNDHVRRLHALFFEVFKCKFCDKTFKNKQYLNDHVKRLHPPILELFKCESTTHYHEETRNILGEIKEEDPLDIKEETLDLNDDEMQFKDKARFKCHFCNKPFSSKRNVKRHILTVHSLNKSLDCDFCEKTFKNEQYLRTHVKRVHLLKCKCCDKSFRNKDVLKNHVTCQHSETLEKLTCDYCQKSFEKRRNLSQHVKLHHSTSDDTVTCEICGRAFKHQQYLRIHIKRVHPLVLELSKCELCDKTFRNKEAFGRHVKFEHSEASESLTCELCQKSFKLRSRLNFHVKVMHSNESFNCGFCDKTFTNEVYLKTHVKYKHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -