Orus019888.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293304.1:112826764-112838103[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00033 0.053 15.6 1.4 2 23 136 157 135 157 0.97 2 16 0.0074 1.2 11.3 4.4 3 23 165 185 164 185 0.97 3 16 0.0069 1.1 11.4 3.5 1 23 193 215 193 215 0.96 4 16 0.00013 0.021 16.9 2.5 1 23 281 303 281 303 0.99 5 16 7.4e-07 0.00012 23.9 4.1 2 23 310 332 309 332 0.95 6 16 0.00048 0.077 15.1 2.8 2 23 349 371 349 371 0.96 7 16 0.0013 0.21 13.7 5.8 1 23 429 451 429 451 0.96 8 16 0.0074 1.2 11.3 0.5 1 23 457 480 457 480 0.93 9 16 3.1e-06 0.0005 21.9 1.5 1 23 485 507 485 507 0.98 10 16 1.5e-05 0.0025 19.8 2.0 1 23 516 538 516 538 0.98 11 16 3.3e-06 0.00054 21.9 1.6 1 23 545 567 545 567 0.93 12 16 2e-06 0.00033 22.5 1.6 3 23 579 599 577 599 0.96 13 16 9.3e-05 0.015 17.3 4.4 1 23 605 627 605 627 0.99 14 16 3.9e-05 0.0064 18.5 1.7 1 23 633 655 633 655 0.96 15 16 6e-07 9.7e-05 24.2 0.4 1 23 661 683 661 683 0.99 16 16 0.00041 0.066 15.3 0.2 1 22 689 710 689 713 0.91
Sequence Information
- Coding Sequence
- ATGGATAACGAGGAAGTTATCCAACTGATGATCGACAAAATATGCCGCTCGTGCATGTGCGAGAGTGGCGACATGCAAAATGTGTTCGAAAAGACAGACACTGTGCTTCTATCGGAAATGCTTATGGCTTGTGCTGAAATTGAGGTCCAATCCGGAGACGGTCTACCATATCTTCTGTGCAACTCGTGCGAAGATAAACTAAGCACAGCCTATGAATTCAAGCTTCAATGCGAAAAATCAGATCAGGCTTTACGAGAGTTGACGCATCAAAAAGATGAAGCAAAAAAGGAAGATATTGTTGTACAACCCGATGTACCTGATCTTCAATCTACATTATCTGACAGGGAGGATGAAGATGATGACTTACCCCTGGCAAAACGGAAAAAGTTGTCCGAAACCATGCTCACTTGTACATATTGCATGAAGGAGTTTACCTCGAAAAAAGGACTGAATGTGCATCTAAGACAACACACGGGAGATGGCATTAGACATTGTCCGCTGTGCCCGTCTAAATATACCAGAACCAACCATCTTGTACGTCATATGAAAAATCACGACAAAGACAAAATGGAGCCGCACAGTTGCAAAGTGTGCGAGGCCAAATTTGAAGAATGTTCCGACTTGTTCAGACACATGACCGAGCATGACGATgttaataaagaaaaaatagtgCTGATTGTGAAGAAAGAGAAGGATGAACAAATAACAGAAGAACTGGACATCAAAGAAGGGGACGATTCAATGGACGTGCCCCTTAGTCAGTTTCCCTTTTCCGATGACGACAACAATGACTTCAATGATGACGTCATTGTAGACGACAAGAAAAAAGATGCCACCTTGTACGAGTGCAAAGAGTGCCACAAAATCCTGACCACTTATCAGGGGTTAAAGGTGCACCTGCGCAAACACACCGGGCTTGAGTTGTCTCAGTGTGAGCATTGCGACAAAAGTTTCACCAAACCCAGCCATTTGACGCGACATTTGAAGGAAATCCATTGTATTTTCAACGGTAAAAGCAAGCTAAAGTCCGATAAAAAAGTAAGAGAATGTGAGTTTTGCGATcgcaaattcaaatacaaaaaaagttaCGTGCATCACATGCAAATCGAGCATGGCATGTCGGATGTGGAAAGTGACGTCAGTGCGCCGGATAAACTAGTCGAAAATGGCGACGAAGTTGACGTAAAAGACGTCATCGATCAGGAAAATGGCAACGTCGATTTGGAGGCTGACGAGGGGGCGTTGGACGAAATCGACGCGGATAAACCAAAGAATCGGAAGGTGCATAAATGTCACGTGTGTCGGGCTGAGTTTGCGCGGGCCAATCATTTGACAAGGCATATGACGTTTCATCGGGCTGTTTTGACGCATAAATGTGACAGGTGTGAGCAGGCCTACTATACTGAGGACTTACTAAAAGAACACATCGAAGCGCAACACATCAACAAACCCTACGTGTGCACAACGTGCAACAAACCCTTCAGCAGAGGCGAACATTTGATTCGCCATCTGCGCCTGCATCAAGAAGTAACCAACGAAGGCCAGCACAAGTGTTCAATTTGTGATTCCATATTTTCACGATCAGACCTACTGGCACGTCACACAAAAACGCACCTTATGCAGGACAAACGACACGTGTGTATTGAGTGCGGCAAATCATTTAATCGTTTGGATAATTTGAAAACGCACCAAAGAATCCATACGGGGATGAAGGATAATTCCAAGTTGCACTTGTGCGTCTATTGTGGCAAGGAATTTAATAATTCTAGTAATATGATCGTGCACATGCGGAGACACACAGGGGAACGTCCGTACAAGTGCAGCGAATGCGGCAAAGGGTTTCCACGTTCGCATGATTTGAAGTGCCACGAACGCACCCATTCAGGAGAAAAGCCGTATTTGTGTACGTTATGTGGCAAATCCTTCAATAAGAGCAACAAATTGCTGCGCCATAGCAGAGTTCACACAGGGGAACGCCCCTATGTATGTAATATTTGCTCGCGCGCGTTTACCCAATCAAATGATCTAGCGTTGCACATGCGTCGTCACACAGGGGCGCGGCCTTATGCCTGCGGGGTGTGTCCGGCCCGTTTCATCCAATCCGGGCAGCTGAAAAACCACAGAAGACAGACCAATCATTGGATGGAAACACAACCAGATTTAAAAGGTGGACATCGGGTGGAGCCGGTTACATCGGCAGTCGAACCAATGCCGATTAAATTTAAATCGTTCGGCAAAACTCGGCAAATCAAGCTGGAAAAGCAGGCCGTGGCTGAGCCGCAGCCCGAACAGCCGCAACAACCATCGCGCATTTTAATGGGGATTATGGGCAATTTGAAGTTGCAGACTGAGGTGGCGCCACTGATTATCGATGGTAATAAACTGATGGAGTTTTCTGGGGCGCAATTGGGGCTGGTTACATTGCCCACGGTGATTCAGGGGGCTGATGGACAGGAGATTAAATTGAAAACGGAAAGTTTGGGCGGGTTTAATTTGGCTGGGGAGGCGGACAAACACGAAGTCGCTACGTTTCAGGAGGGTGAGGCTACGTTTTCCACTGTTGCCACGTCGACTACGTACAGTGATGCCAGCTTTAGTTTCCAACAGTTCAACTAG
- Protein Sequence
- MDNEEVIQLMIDKICRSCMCESGDMQNVFEKTDTVLLSEMLMACAEIEVQSGDGLPYLLCNSCEDKLSTAYEFKLQCEKSDQALRELTHQKDEAKKEDIVVQPDVPDLQSTLSDREDEDDDLPLAKRKKLSETMLTCTYCMKEFTSKKGLNVHLRQHTGDGIRHCPLCPSKYTRTNHLVRHMKNHDKDKMEPHSCKVCEAKFEECSDLFRHMTEHDDVNKEKIVLIVKKEKDEQITEELDIKEGDDSMDVPLSQFPFSDDDNNDFNDDVIVDDKKKDATLYECKECHKILTTYQGLKVHLRKHTGLELSQCEHCDKSFTKPSHLTRHLKEIHCIFNGKSKLKSDKKVRECEFCDRKFKYKKSYVHHMQIEHGMSDVESDVSAPDKLVENGDEVDVKDVIDQENGNVDLEADEGALDEIDADKPKNRKVHKCHVCRAEFARANHLTRHMTFHRAVLTHKCDRCEQAYYTEDLLKEHIEAQHINKPYVCTTCNKPFSRGEHLIRHLRLHQEVTNEGQHKCSICDSIFSRSDLLARHTKTHLMQDKRHVCIECGKSFNRLDNLKTHQRIHTGMKDNSKLHLCVYCGKEFNNSSNMIVHMRRHTGERPYKCSECGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNICSRAFTQSNDLALHMRRHTGARPYACGVCPARFIQSGQLKNHRRQTNHWMETQPDLKGGHRVEPVTSAVEPMPIKFKSFGKTRQIKLEKQAVAEPQPEQPQQPSRILMGIMGNLKLQTEVAPLIIDGNKLMEFSGAQLGLVTLPTVIQGADGQEIKLKTESLGGFNLAGEADKHEVATFQEGEATFSTVATSTTYSDASFSFQQFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -