Basic Information

Insect: Orchestes rusci
Gene Symbol: -
Assembly: GCA_958502075.1
Location: OY293311.1:29649828-29651645[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1.3e-05 0.0021 20.0 0.8 2 23 17 39 17 39 0.95

2 19 0.00016 0.026 16.6 0.2 2 23 46 68 45 68 0.95

3 19 9.9e-07 0.00016 23.5 1.5 2 23 76 98 75 98 0.95

4 19 0.66 1.1e+02 5.2 1.5 3 23 106 127 104 127 0.91

5 19 0.066 11 8.3 0.0 3 23 136 159 134 159 0.91

6 19 0.034 5.5 9.2 0.7 2 23 167 188 166 188 0.93

7 19 5.3e-08 8.6e-06 27.5 0.2 1 23 195 217 195 217 0.98

8 19 4.6e-06 0.00074 21.4 0.2 1 23 223 245 223 245 0.97

9 19 0.00057 0.092 14.8 1.7 1 23 251 274 251 274 0.96

10 19 0.074 12 8.2 0.5 2 20 283 301 282 303 0.92

11 19 0.29 46 6.3 1.4 2 23 312 332 312 332 0.86

12 19 4.2e-05 0.0067 18.4 1.5 1 23 341 364 341 364 0.94

13 19 5.6e-05 0.009 18.0 0.9 1 23 371 394 371 394 0.97

14 19 0.012 1.9 10.7 0.9 2 23 401 423 400 423 0.96

15 19 0.0026 0.42 12.8 0.4 1 23 430 455 430 455 0.90

16 19 0.03 4.9 9.4 6.3 1 23 462 484 462 484 0.97

17 19 6.8e-05 0.011 17.7 1.5 3 23 492 512 490 512 0.98

18 19 0.0019 0.3 13.2 0.9 1 23 518 540 518 540 0.96

19 19 4.4e-06 0.00071 21.5 0.7 1 23 546 569 546 569 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1.3e-05	0.0021	20.0	0.8	2	23	17	39	17	39	0.95
2	19	0.00016	0.026	16.6	0.2	2	23	46	68	45	68	0.95
3	19	9.9e-07	0.00016	23.5	1.5	2	23	76	98	75	98	0.95
4	19	0.66	1.1e+02	5.2	1.5	3	23	106	127	104	127	0.91
5	19	0.066	11	8.3	0.0	3	23	136	159	134	159	0.91
6	19	0.034	5.5	9.2	0.7	2	23	167	188	166	188	0.93
7	19	5.3e-08	8.6e-06	27.5	0.2	1	23	195	217	195	217	0.98
8	19	4.6e-06	0.00074	21.4	0.2	1	23	223	245	223	245	0.97
9	19	0.00057	0.092	14.8	1.7	1	23	251	274	251	274	0.96
10	19	0.074	12	8.2	0.5	2	20	283	301	282	303	0.92
11	19	0.29	46	6.3	1.4	2	23	312	332	312	332	0.86
12	19	4.2e-05	0.0067	18.4	1.5	1	23	341	364	341	364	0.94
13	19	5.6e-05	0.009	18.0	0.9	1	23	371	394	371	394	0.97
14	19	0.012	1.9	10.7	0.9	2	23	401	423	400	423	0.96
15	19	0.0026	0.42	12.8	0.4	1	23	430	455	430	455	0.90
16	19	0.03	4.9	9.4	6.3	1	23	462	484	462	484	0.97
17	19	6.8e-05	0.011	17.7	1.5	3	23	492	512	490	512	0.98
18	19	0.0019	0.3	13.2	0.9	1	23	518	540	518	540	0.96
19	19	4.4e-06	0.00071	21.5	0.7	1	23	546	569	546	569	0.97

Sequence Information

Coding Sequence: ATGGTTTACTATCAATCCAAATCAAGTTTCAGGAAAATCACAACCGAGTCATGTCCCGAGTGCAACAAAACCTTTTCCAAGATCAAATACCTCAACCGCCATCTCAATTTAGTACATCGCAAGCTAAACTCAACAACTTGCAACGAATGTGGAGGGATATTTTCCAGTAAAATATCCCTCAAGCAACACATTGATAGGATCCACAAAGGCATTGTTGCCGCCTTGTCCTGCGACATATGCGGCAAAAGCTTCACCACCAAAGGTCACTTGGTGTCCCACAAAAAGTCCATACACCTCAAGCTGTTCAAAGTGCACTGTCCCCTATGTCAAAAGGGCTTTATCTGCGATGGTGCCCTCAAGCAACATACCCAGAATGTCCACGACAAATCAGACCAAACTACCATTTGTCCAGAAGATGGTTGCAATAAAGTATTTCAAGGTTATGGAGGGTTGAAGTACCATCTTCTTGCGGAACACACCAAGGATAAGCCGGTTCTTGTATGTGATCAGTGTGGCAAGTTGTTTGATCATCCGTACATCTACAATAAGCATCTGTATTTGCACAAAGTGGGCCCGAGGAGCTTTCCTTGTGGTGTTTGTGGTAAGAGCTTTACCGCTAATTCTAGCTTGAAGCAACATATGAGGGTGCACACGGGGGAGAGGCCGTACGTTTGCGACAAGTGTGGACAGGGTTTTATTAAATCTTCGTTGTTGAAGAGCCACATGGTGGTACATACCAAGGAAAGACCTTTTGCTTGTAGATTCTGTGAGAAGAAATATACACAAAGGACTCCTTTGGTGAGGCATATGCAGCGGAGCCATCCAGAATTTAGTGACTGGACTTGCGAGTGTCCCCTGTGCAATGCCCTATTCCCTTCACACACTGATCTGCTGAAGCACAAGATCGTGTGCGACCCCACTGGTTCCTACGAAAAGTGCAACATTTGCAAGAAATTTATTAGAAAAGAGAAGTACCAGAGGCACGTTGGTTGGCACAAGGTCAAAAGGAAGAAACAGATACATGCATGTGAGTTGTGTTCCAAAACCTTTACCAGTCAGCAGTACCTGAAGATACACATTGACAAGGTGCATGAGAACAAAGGGGTTTTGTACCCTTGCGATGTTTGTGGGAAAACATTTTCTACGAAATACCGAGCAGAGTATCATAAGAAAACAATTCATTTGAAGGATTTTAATTTACATTGCGAGCAGTGTGGTCGTGGGTTTTTGTATCTTACTGAGCTAACCACGCATGTGCGCAAGGTTCACGACAAGGAGGTGCGCATATTTAGTTGCGCACAAGACAGTTGCAGGCGCACCTTTAGGTCCAACGCAGCATTACAATATCACCAGCAAATTGGGCATTCAGACTCCAAGCCCCAACACGTGTGTGTGCGTTGTGAGAAGGTGTTTCACCACATTAGTTTGTTTCGGAGACACGTGAACAGGCATACAGATCCAAAGAGGTATGGATGTAATGTCTGTGATAATCAGTACACAACGAAGCATAGTTTGGAGGTTCACATGCGGTCTCATACTGGAGAAAAGCCGTATGTTTGTGAACATTGTGGACATGCCTTTAGTGCTATCAAGTTTCTGAAAGTGCACCTGGTGGTGCACACTGGAGAACGGCCTTATGCTTGTGGGCAGTGTCAAAAAACTTTTACTCAAAAGGGTAGTTTGAATATTCACGTAAAGAAGGATCATTCAGTTGATAAAGCATAG
Protein Sequence: MVYYQSKSSFRKITTESCPECNKTFSKIKYLNRHLNLVHRKLNSTTCNECGGIFSSKISLKQHIDRIHKGIVAALSCDICGKSFTTKGHLVSHKKSIHLKLFKVHCPLCQKGFICDGALKQHTQNVHDKSDQTTICPEDGCNKVFQGYGGLKYHLLAEHTKDKPVLVCDQCGKLFDHPYIYNKHLYLHKVGPRSFPCGVCGKSFTANSSLKQHMRVHTGERPYVCDKCGQGFIKSSLLKSHMVVHTKERPFACRFCEKKYTQRTPLVRHMQRSHPEFSDWTCECPLCNALFPSHTDLLKHKIVCDPTGSYEKCNICKKFIRKEKYQRHVGWHKVKRKKQIHACELCSKTFTSQQYLKIHIDKVHENKGVLYPCDVCGKTFSTKYRAEYHKKTIHLKDFNLHCEQCGRGFLYLTELTTHVRKVHDKEVRIFSCAQDSCRRTFRSNAALQYHQQIGHSDSKPQHVCVRCEKVFHHISLFRRHVNRHTDPKRYGCNVCDNQYTTKHSLEVHMRSHTGEKPYVCEHCGHAFSAIKFLKVHLVVHTGERPYACGQCQKTFTQKGSLNIHVKKDHSVDKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -