Orus042827.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293311.1:1347336-1368145[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 6e-07 9.6e-05 24.2 0.8 1 23 53 76 53 76 0.98 2 17 5.2e-06 0.00084 21.2 1.9 1 23 83 106 83 106 0.97 3 17 1.6e-05 0.0025 19.7 4.4 1 23 159 182 159 182 0.97 4 17 2.7e-05 0.0043 19.0 1.0 1 23 189 212 189 212 0.98 5 17 1.5 2.4e+02 4.1 0.1 2 11 219 228 218 232 0.92 6 17 1.4e-06 0.00023 23.0 1.6 1 23 274 297 274 297 0.98 7 17 0.0014 0.22 13.6 3.7 2 22 413 433 412 436 0.90 8 17 7.4e-05 0.012 17.6 1.9 1 23 440 463 440 463 0.90 9 17 1.7e-05 0.0027 19.7 0.4 2 23 501 523 500 523 0.96 10 17 0.0061 0.99 11.6 8.8 2 23 531 553 527 554 0.84 11 17 5e-05 0.0081 18.1 0.8 2 19 562 579 561 582 0.94 12 17 0.23 37 6.6 0.8 10 23 582 596 580 596 0.95 13 17 1.6e-07 2.6e-05 26.0 1.2 1 23 603 626 603 626 0.97 14 17 4.1e-06 0.00065 21.6 4.1 2 23 634 656 633 656 0.97 15 17 0.01 1.6 10.9 4.4 2 23 663 685 662 685 0.94 16 17 3.2e-05 0.0052 18.7 1.1 2 23 692 714 691 714 0.93 17 17 6.2e-06 0.001 21.0 3.7 1 23 721 744 721 744 0.97
Sequence Information
- Coding Sequence
- ATGAAACTAAAACCGATCCTTTCCAGGCTCATACAATTGGTCAGAGAAGAACTCATCATCAAAAATGAAGACCCTGATTCTCCAGAAGAAGAACCATCGGATGTTGAAGATAGCGAAGAAAAAATCCTAGAGATATCAAATTCTCATTATAATGGATTCAAATGTGATATTTGCAACAAGATATTCACTCAAAACAGATCCTTGAAGCTACATATCAAGGTTGTGCATAATAAAAATCCCGAGAAATTCAAATGTCTGCTGTGTGACAAGACTTTCACGCGTAAAGACAATTTGAACTTTCACATGAAGATCGTGCATTCAGAGAGTCAGGATTCAAAATGCGAGCTCATTCCATTGGTCAAAGAAGGACTCATCATCAAAGATGAAGATCCTGATTTTCTAGAACAAGATCCATCGGACGTTGAAGATATTGATGAACAAACCCTGGAAAAACCAAATTCTCAATATAACGGATTCAAATGTGACTTTTGCAACAAGTTATTCAAGCACAAAAGTTCTTTGAAACAACATATCCAGATTCTGCATAATGATAATCCCGAAAAATTCAAATGTTTGCTGTGTGACATGTCTACCGCACGTAAAAACAATTTAAATGTGCATATGAAGCGGATGCATTCAGAGAATCCGGAAATaaaatgcgagttttgtgacCAATCATTCAAGCTCATTCAATTAGTCAAAGAAGAACTCATAATCAAAGATGAGCACACTGATTTCCTAGATGAACTATCGGAAGTTGAGTATATTGAAGAAGAAACCCTGGAACCATCATCAGAAACAAACATTGCATGTCACGGATTCAAATGTGACCTTTGCAACAAGTTATTCACGCGCAACAGTAACTTAAGCCAACATATCAAAGTCCAGCACAATGATAAACCCGACAAATTCAAATTCGACTGGGTAGGTCTGAGTCAACTTCTAATTGGCGTGTTTTTGCTAAACCCTGTATTAGGGGATCTTGAAGTTTCTCAGAAAGAATTTTCTGATGCTGCGTTTGTTTTGGCGTTTGTTTTGAGCAGACCAGAAAAACCACTTGTGGGATTTAAACCTCCAATAATAGTTGACTGGATCATACAATTGGTCAGAGAAGAAATCAACATTAAAGATGAAGACCCCGATTTTGTAGAACTCTTGGACGATGACGATAGTAAagaagaaatcatgaaatcaTCAGACACAAACGTAACAAAAGATTCTCAAAGTAACGCAATCAAATGTTACCTATGCAACAAGTTATTCACGCACAAGAGTTCCTTAAAGCTACATATAATGCATAATGAACATTACAAAAAATTTAACTGTACTCTGTGTGAAAGGTCTTTCAGACGTAAAGACCATTTGGAAATGCATGTGGAATTTGTGCATTTGGAGATACAGGAAATAAAATGCACGTTTTGCTGCCAGACATTCAACTGTGGAACATCTTTGCAAAAGCATATCCATCAACAGCATTCCGAAGATCATGAAGAAGCAGTCAAATGTGCGTTTTGTGATAGGTCTTTCGACCAAAAGACAGATTTGGCTAAACATATTAACATGATGCATTTTAAAATCTACAAATGTTGGAAATGTGAGTATTGTGGTAAGAGTTTCAAACATAACAAGCATTGGTTGCAAAGACATATCAAGATTCACCACTCGGACAGTAATAAAAGTTCAAAATGCAATTTGTGTGACAAGGTTTTCAAGCAAAAGACTCAATTGCGTGAACATGAGCTCTTCACGCGCAAAGATCATTTATCCGAGCATATCAAGATGCTGCACTGTGATAATCTGGACCCATTCACATGCTCCGTTTGTGATAAGTCATTCAAATATAAAGTCAGTCTGCGCAGACACATGCTGATAGAACATTCACAGAATCACGAGAAAATCAAATGTGGCTTTTGtgacaagtttttcaaaagaaagcATAACTTGCAGGAGCATATCAAGACGCAACATACTGATGATGAGCCATTGCACTGTGATTATTGCGGCAAGCCGTTCAAGTGTCAGGTGTACTTGCGCAAGCATGTCACACGTCAGCATTCGACAAATGACAGACTGAATTGTGACTTTTGTGATAAGTCATTCACGCTCAAGGATAATCTGCGCAGTCATGTCAAGGAGCAACATTCGGAAGgttatgaaaagttcaaatgTACATTTTGTGAAAAGACTTTTAAGCGTAAATTTTATTTGCGGGCGCATATTGATACGCAGCACCGCGCATGA
- Protein Sequence
- MKLKPILSRLIQLVREELIIKNEDPDSPEEEPSDVEDSEEKILEISNSHYNGFKCDICNKIFTQNRSLKLHIKVVHNKNPEKFKCLLCDKTFTRKDNLNFHMKIVHSESQDSKCELIPLVKEGLIIKDEDPDFLEQDPSDVEDIDEQTLEKPNSQYNGFKCDFCNKLFKHKSSLKQHIQILHNDNPEKFKCLLCDMSTARKNNLNVHMKRMHSENPEIKCEFCDQSFKLIQLVKEELIIKDEHTDFLDELSEVEYIEEETLEPSSETNIACHGFKCDLCNKLFTRNSNLSQHIKVQHNDKPDKFKFDWVGLSQLLIGVFLLNPVLGDLEVSQKEFSDAAFVLAFVLSRPEKPLVGFKPPIIVDWIIQLVREEINIKDEDPDFVELLDDDDSKEEIMKSSDTNVTKDSQSNAIKCYLCNKLFTHKSSLKLHIMHNEHYKKFNCTLCERSFRRKDHLEMHVEFVHLEIQEIKCTFCCQTFNCGTSLQKHIHQQHSEDHEEAVKCAFCDRSFDQKTDLAKHINMMHFKIYKCWKCEYCGKSFKHNKHWLQRHIKIHHSDSNKSSKCNLCDKVFKQKTQLREHELFTRKDHLSEHIKMLHCDNLDPFTCSVCDKSFKYKVSLRRHMLIEHSQNHEKIKCGFCDKFFKRKHNLQEHIKTQHTDDEPLHCDYCGKPFKCQVYLRKHVTRQHSTNDRLNCDFCDKSFTLKDNLRSHVKEQHSEGYEKFKCTFCEKTFKRKFYLRAHIDTQHRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -