Orus045318.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293311.1:28748244-28757933[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.1e-06 0.00051 21.9 2.8 1 23 70 93 70 93 0.98 2 17 0.0016 0.25 13.5 2.6 1 23 98 120 98 120 0.98 3 17 0.0038 0.61 12.2 3.1 2 23 128 150 127 150 0.95 4 17 4.1e-07 6.6e-05 24.7 1.8 1 23 169 192 169 192 0.98 5 17 0.0044 0.71 12.0 3.6 1 23 197 220 197 221 0.97 6 17 1.3e-05 0.002 20.0 3.5 2 23 257 279 257 279 0.95 7 17 4.2e-07 6.8e-05 24.7 1.4 1 23 285 308 285 308 0.98 8 17 3.5e-06 0.00057 21.8 1.2 1 22 315 336 315 336 0.96 9 17 0.00065 0.1 14.7 0.9 1 23 372 395 372 395 0.97 10 17 2.9e-06 0.00048 22.0 0.8 2 23 402 424 401 424 0.95 11 17 0.0006 0.096 14.8 2.0 2 23 434 456 434 456 0.94 12 17 0.0067 1.1 11.5 3.6 2 23 464 486 463 486 0.96 13 17 1.1e-05 0.0018 20.2 2.2 1 23 493 516 493 516 0.97 14 17 2.8e-06 0.00046 22.1 4.1 2 23 524 546 523 546 0.96 15 17 2.2e-05 0.0036 19.3 1.5 2 23 554 576 553 576 0.95 16 17 3.2e-06 0.00052 21.9 0.6 1 23 583 606 583 606 0.95 17 17 2.1e-05 0.0033 19.4 6.5 1 23 613 636 613 636 0.97
Sequence Information
- Coding Sequence
- ATGACAAGAAGTATGGTTGATTGTGGAAGATCTATTTTAGTCAAACATAATAAACTATATggATCAACAACCTATAATATATGTGAAGAAACtcaaaatatcttggaaaacatcaaagaagaagaaccacTTTTCATTAAAGAAGAAACATTGGACATAAATGATGATGAAGCACAATTCGAAGAAATCCTCAACGACCAAACAGGATTCAAGTGTGATATCTGTGATAAATCTTTCAAGTTCAACTACAATCGTAACAGGCATGTCAAAACAGTCCATTCAACCGAAAGTTTCAAGTGTGAGTTTTGCAACAAAGTTTCCATGGATAAATACTACATGCGAAGGCACGTTAAACTACATCAAcccaattttgaacaaataaaaTGCGAATTGTGTGACAAGttctttaaagaaaaaaaagttctcaGCAGACATGTCAAACATCAACATTCAACTTTTGGGGGTGGAACACAATCTGAAGAAATCCTCAGCAACCAAACAGGATTCAAGTGTGACATCTGTGATAAATCTTTCAAGCTTAACTACTATCTTAACAGGCATGTCAAAACAGTCCACTCAACTGAAAGTTTCAAGTGTGAGTTTTGCAACAAAGTTTCCATGGATAAATACTACATGCGAATACATGTTAGGAAACTACATCATCAGcccaattttgaacaaatagaATGGGAGTCTTGTGATGAGTCTTTTAAAAGGAAAGAATTTTCCAGCTCACATGTCAAGAATCCACAATCTGAAGTGCTTGAGGTCTGCAATTTTTGCCAAAAGACTTTCAAGCACAAGGGCAATCTTACAAGTCATATTAAACTTATGCACTTAACCAGTGAAATATTCAAGTGTGAGGTATGTGACACCGTTTTCAAGGACAAGGATTCTTTACAAGTCCATAGAAGGAAATTTCATTTGAACACTAACAAGCCGTTCAATTGTAATGTTTGTTACAAAACGTTTAGGCGCAAAGAGTATTTACAAGCACACATTAGacgAACATATGAAGAGATCTTAGAATACATAAAAGAAGAAGAACCGCTTGACATTAAAGAAGAACCACTGGAATCGCAGCTCGAAGAAATCCTCAGTGACCAATCAGAATACAAGTGTGATTTGTGTGCTAAATCTTTCAAGCTCAAGTCCATTCTCAACAGACATGTTAATAAAGTACACTCAGTCAAGGAAAATTTACACTGTGAATTGTGCGACAAGTCTTTCAAGCGTAAAGCCTACTTGGAGGCCCATATTGAAAGAGTACATCCTCCTATTCTGCATCTGCAACAAGCGAAATgcgaaatttgtaataaattttTCACGAGTGAAGAAATGTTCAGCAGACATGTCAAATTCCGACATTCAGAAGATTCTGAAAGACTTACATGTGGTTTTTGCCAAATGTCTTTTGAACagaaaaaatgtcttgataGACATGTTAGATCGAAACACTCGACTAGTGATGGAAGTTTTAAGTGTGCATTTTGCGATAAGACCTTCAAGATGAAATACTACTTGAAAGCCCATGTTAACAGAATACATCGGCCCAATTCTGATCTTATCAAGTGCGACGTTTGTGACAAGTCTTTTAAGCATAAAGACGACTTTCGCAGACATACCAGATATCAGCATTCACAAGCAGCTGAGGAAATTACCTGCGATTTTtgccaaaagtcttttaaaCAGAGAAGCTATCTTGTTAGCCATGTCAGATTAAAACACTCGACCAGTGGTAAAAGGTTCAACTGTGGATTTTGCGATAAGTCTTTCAAGAGCAAAAATAACTTGGAAGCTCATGTTATAAGAATACATCAGCCCAATCCTGAACTTTTCAAGTGCGAGTCTTGTGACAAAACCTTTAGGCATAAAGACGACTTTCGCAAACATACGAGATATCAACATTAG
- Protein Sequence
- MTRSMVDCGRSILVKHNKLYGSTTYNICEETQNILENIKEEEPLFIKEETLDINDDEAQFEEILNDQTGFKCDICDKSFKFNYNRNRHVKTVHSTESFKCEFCNKVSMDKYYMRRHVKLHQPNFEQIKCELCDKFFKEKKVLSRHVKHQHSTFGGGTQSEEILSNQTGFKCDICDKSFKLNYYLNRHVKTVHSTESFKCEFCNKVSMDKYYMRIHVRKLHHQPNFEQIEWESCDESFKRKEFSSSHVKNPQSEVLEVCNFCQKTFKHKGNLTSHIKLMHLTSEIFKCEVCDTVFKDKDSLQVHRRKFHLNTNKPFNCNVCYKTFRRKEYLQAHIRRTYEEILEYIKEEEPLDIKEEPLESQLEEILSDQSEYKCDLCAKSFKLKSILNRHVNKVHSVKENLHCELCDKSFKRKAYLEAHIERVHPPILHLQQAKCEICNKFFTSEEMFSRHVKFRHSEDSERLTCGFCQMSFEQKKCLDRHVRSKHSTSDGSFKCAFCDKTFKMKYYLKAHVNRIHRPNSDLIKCDVCDKSFKHKDDFRRHTRYQHSQAAEEITCDFCQKSFKQRSYLVSHVRLKHSTSGKRFNCGFCDKSFKSKNNLEAHVIRIHQPNPELFKCESCDKTFRHKDDFRKHTRYQH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -