Orus045365.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Orchestes rusci
Gene Symbol
PRDM13
Assembly
GCA_958502075.1
Location
OY293311.1:29561116-29567797[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 58 0.088 14 7.9 0.1 1 23 83 105 83 105 0.95
2 58 0.004 0.64 12.2 1.0 1 23 113 136 113 136 0.93
3 58 0.92 1.5e+02 4.7 0.3 2 23 141 163 140 163 0.94
4 58 0.033 5.2 9.3 2.7 1 23 169 192 169 192 0.95
5 58 0.0013 0.21 13.7 0.3 2 23 197 218 196 218 0.96
6 58 1.9e-05 0.003 19.5 0.2 1 23 253 275 253 275 0.98
7 58 0.0029 0.47 12.6 4.1 1 23 281 303 281 303 0.98
8 58 0.00031 0.051 15.6 0.2 1 23 309 331 309 331 0.96
9 58 0.0049 0.79 11.9 4.8 1 19 337 355 337 360 0.91
10 58 8.1e-06 0.0013 20.6 3.8 1 23 401 423 401 423 0.99
11 58 0.0033 0.53 12.4 1.6 1 23 429 451 429 451 0.98
12 58 8.1e-06 0.0013 20.6 0.6 1 23 457 479 457 479 0.99
13 58 0.014 2.3 10.5 0.1 2 23 486 508 485 508 0.95
14 58 2.2e-06 0.00036 22.4 1.1 3 23 514 535 512 535 0.93
15 58 1.6 2.5e+02 4.0 1.3 2 23 543 562 543 562 0.85
16 58 4.4e-05 0.0071 18.3 0.7 3 23 573 593 572 593 0.98
17 58 2e-07 3.2e-05 25.7 2.8 1 23 599 621 599 621 0.98
18 58 0.00075 0.12 14.5 4.6 1 23 627 649 627 649 0.97
19 58 0.00066 0.11 14.6 1.6 1 23 655 678 655 678 0.96
20 58 0.00069 0.11 14.6 3.0 1 23 697 719 697 719 0.98
21 58 1.5e-06 0.00024 23.0 2.7 1 23 727 749 727 749 0.98
22 58 0.00016 0.026 16.6 3.1 1 23 756 778 756 778 0.97
23 58 0.64 1e+02 5.2 0.7 2 23 785 807 784 807 0.96
24 58 0.018 2.9 10.1 1.4 2 23 815 836 814 836 0.94
25 58 6.9e-06 0.0011 20.9 0.2 1 23 842 865 842 865 0.97
26 58 0.004 0.65 12.2 1.9 1 23 870 892 870 892 0.96
27 58 3.9e-07 6.2e-05 24.8 0.6 1 23 898 920 898 920 0.99
28 58 0.028 4.6 9.5 0.2 1 15 926 940 926 942 0.86
29 58 0.0006 0.097 14.8 1.7 2 23 949 970 948 970 0.96
30 58 4.9e-05 0.0079 18.2 0.8 1 23 976 998 976 998 0.98
31 58 0.0013 0.21 13.7 2.8 1 23 1004 1026 1004 1026 0.97
32 58 0.093 15 7.9 2.2 2 23 1033 1055 1032 1055 0.89
33 58 0.00035 0.057 15.5 0.5 2 23 1061 1082 1061 1082 0.97
34 58 0.0011 0.18 13.9 2.1 1 23 1091 1114 1091 1114 0.96
35 58 0.00032 0.052 15.6 0.5 1 23 1121 1143 1121 1143 0.98
36 58 0.00011 0.018 17.1 0.7 2 23 1150 1171 1149 1171 0.98
37 58 2.9e-05 0.0046 18.9 0.7 1 23 1177 1199 1177 1199 0.97
38 58 0.0095 1.5 11.0 0.0 1 20 1205 1224 1205 1226 0.93
39 58 0.15 25 7.2 5.9 2 20 1240 1258 1239 1261 0.95
40 58 5.5e-05 0.0088 18.0 1.2 1 23 1267 1290 1267 1290 0.97
41 58 0.0037 0.59 12.3 5.1 1 23 1296 1318 1296 1318 0.97
42 58 0.011 1.8 10.8 2.0 3 23 1326 1347 1325 1347 0.95
43 58 0.00016 0.025 16.6 0.7 2 23 1355 1376 1354 1376 0.97
44 58 0.00036 0.058 15.5 3.9 1 23 1385 1408 1385 1408 0.95
45 58 0.00082 0.13 14.3 0.2 1 23 1415 1437 1415 1437 0.97
46 58 7.4e-05 0.012 17.6 1.0 2 23 1444 1465 1443 1465 0.97
47 58 3.5e-05 0.0057 18.6 5.1 1 23 1471 1493 1471 1493 0.98
48 58 0.3 48 6.3 1.5 1 23 1499 1522 1499 1522 0.93
49 58 0.0029 0.47 12.6 1.0 5 23 1578 1597 1574 1597 0.92
50 58 4.9e-06 0.0008 21.3 3.0 1 23 1603 1625 1603 1625 0.98
51 58 0.094 15 7.9 1.8 1 23 1632 1654 1632 1654 0.88
52 58 0.00017 0.027 16.5 1.2 1 23 1660 1683 1660 1683 0.98
53 58 3.5e-06 0.00057 21.8 0.3 3 23 1689 1709 1688 1709 0.99
54 58 0.0036 0.57 12.3 0.6 2 23 1719 1741 1718 1741 0.96
55 58 0.00048 0.077 15.1 0.2 1 23 1747 1769 1747 1769 0.98
56 58 0.0004 0.065 15.3 0.7 2 23 1776 1797 1775 1797 0.96
57 58 0.00033 0.053 15.6 0.7 1 23 1803 1826 1803 1826 0.95
58 58 0.014 2.2 10.5 0.6 1 23 1832 1855 1832 1855 0.93

Sequence Information

Coding Sequence
ATGCTCCTGCTTTGGCTCCTTGGAGTGGCTGCTGTCTGTGATAACGCAGCTTTGACTTTTTTGAAGCTCTCATCTAAACAGTGTCTCCTTGGTGGTTTGGTGGACGTGGCTTCGAACAGCTTGAGAGCCACTGGACTCTGGAGTTGGTTTGGATGGATAGCCCTCGTTGGAACTCTTGTAGGTTGTTTGGTTGGTTCTGGGTGCGAGATTATAACGATATCTGTGGAAGATTCTCCAGTGCGCAAGTTCAAATGCTTTGTCTGCATGCAGATCTTCCCTTCCAAAACAGAACTCATCCAGCACGTAGCAGCACATACACGTGACGTGTCCAAGAAGTTCAAGTGTAGCAGCTGCAACAGGAGTTTCAACACACAACCTGATTTGGACATCCATGAGTTCATGCGTCACAACACCGAAAAATCTTGCCCCTTTTGCTATGAAATACTCCCCAACAAGGAAACCTACAACGTGCACGTGAAACAGTATCACCTGCAAGACTTCAACCACTTCTGTACCCTGTGCGATGAAGGTTTTGTCTTGGCTAGCGACTACAAGCACCACAGAGAGACAACGCACGAACCCATGAAGCCCTGCAAGGTTTGCGGATTGCGATTTCCTTCCACCAGAGACTTGAGGGAGCACGCGCGCCAGCATGAGATGGACGGAAAAAGACCAGACCAGAGATGCCAGATTTGCCAGACGCTTGTTAAAGACTTGAACCGTCACCATATGCAAAATCATACGGATAATAAGCAGTTTGTTTGTGACCTTTGTGGAAAGAGGTTCAAGGAGAAAGCTGGGTTGCAGTTGCACTTGAATGTGCACAACAATGTGAGGCCTCATAAGTGTGAGGACTGCAAAAAGGGGTTTCTTACCAAGCAGCTGTTGCGGGTGCATAGGAGGAAGCATACGGGAGAAAAACCGTATGAGTGTGATGTATGTGGTAAGAAGCTAACCAGGCGGGGTGGATTGGTTAGGCATTTTACCATACATACGGGGGATAAGGCGTATACTTGTCAGTTTTGTGGCAAGAAGTTTGCCAGAAGGCACTACTTGATTTCTCATTGTAAGGCCATACATGGAGCTGATGTACAAAGTAACATCTTCCCAACACAATTGGAAGATGGTAATAGTTACTATTCCAGGCTCCCCCTATTGGTGACCATAAAAGAAGAGCCGCTAGACTCCCCCAAAAACCTCTTCCAATGTACCTTCtgtcaaaaaatcttcaatCGCAAAAAAAACCTGAGCCGTCACTTGTTAACCCACAAATCAGAGCGTCCGTTCAAATGTACCACATGCCAAAAGACATTCAAAGCTAAAAACGTGCTGGTCAACCACGAGAAGATCCATCAGGAAAGGGTCAAATTTCAATGCGACATCTGCCAGAAAAGATTCGTATCACAAGCCAGCATGAAGGTCCATATAATGCGGCACACCAACCAGTTCGTTGTGTCATGCGAAATGTGCGGGCAAGGCTTTTTCAGCTATGCGCAGTACAACTCGCACTTGGAGTCTGCGCATTTCAACCAAATAATATGCGAAGTATGTGGCAAACAATTTTCGAACAAGTACAACCTAAAGCACCACATGGACCTCATGCACAGTGATACCAACAACATGGAAACATGTCCTGTTTGCCAGAAGCAAGTAAAGTTCCTCCAACGCCACATGCGCAGGTCACATACGGTAAAAATGCCGCGTAAGCCAACGCTGTGTGACCTATGCGGCAAGGAGTTCAAGACCAAAGAGGGCTTGAAGATGCATCTGATGAAGCATAAAGGGATCAAACCGCACAAGTGCGAGTATTGTGGCAAATCCTTCACGATAAAGGACAACTTGAGGCTGCACATTCGGACGCACACGGGGGAGAAACCCCATGAGTGTCCCGTTTGCCACAAGTGCTTCTCCCAGATCACCCCGATGAAAGTTCATATGAGGTTGCACTCTGGAGAGAAGCCTTTTGAGTGCGGCTTGTGCAATATGAAGTTCACGTCCAAGACGTTATTAAATATTCATAGGAAGAATAGGCACAACGACCCCAGCACCCTATGCCAGGTGGTGATAAAACAAGAAGATGAAAAGCCCTTTCAATGTAACCAATGCTCCAAAAACTTTATGCTGAAGAAGTACCTCATCCGGCACATAAAGAACCACACAAGAGGGCTGACAAGGCCCTTTCGTTGCTCGCACTGCGACAAGGGGTTCTCCTCCAATTACGGTCTCAAGAGCCACATGCAGGTCCATCAGGACCTCCCAGCAAACTTCGCCTGTGATCTTTGCCCTAAAAAGTTCAAAAGGCACAAGAACTTGCTGCTTCACGTCAAAAGGCACACCAAAGACTACGTTGTGACATGCGCAGAGTGCAACATTGGCTTCGTGTGTAAAGGCGACTACCTGCAACACCTGAGGAGTAAGCACGACGTTAACAAAGAAAAGATGGTCTGCTTTATATGTGGCAGGGAATTCATCAAAGGTCACTTCAAACGCCACATGTTGAACGTCCATGGAGACAAGGGGCACTTTCCTTGTGAACTATGTGGCAAGGTCTTCGACAGACAAATTGGCCTTCAAAGACACGTGAAAATGTTCCACAATCTCATACCTCACGTGTGTGAGATCTGTGGACAGGAGTTCAGATGGAAGCACAGTTTGAGGGACCACTTGAAGGGACACTCAGGACACAAGCCCTTCCAATGTCCTTACTGTGAAAAGGCCTTCATCAGGAGTGACTTTCTGAAGCAGCACATCAGGGTTCATACGGGACAGCGGCCTTTTGAGTGTCAGGAGTGCGGCAAAGGGTTCACCCAGGCCACTCCTTTGAAAGGCACAAGGAACATCAAACAATGCCAGGTGTGTCAAAAGTTCTTCAAAGACACCAGGTCCCTCAACAAGCATCTAATTGCCCATCAAATTGAACGTCCCTACAAGTGCAACCTTTGCCAGAAGGGCTTTAAACGGAAGTACGACATCTCCATCCATATGGCAGTCCATGGACAACATGCCACCTTCAACTGCAACTTCTGCCCTAAAACCTTTAAAAGCAAACAAGCCTTCTTGGTGCACAAAAGCAGGCATTTGAAGAAGTACGTTATCACTTGTCAAGCCTGCAATAAAGGCTTTGTTACCAAGCATGAGTACTACAAGCATAGGGGGTATAAGCATGGCAATAACCCCAATGTATGCGAGGTTTGTGGTCGTGCTTGCTACGATAAAACTGCGTTAGTTAATCATTTAAAAACCCACGAGGATGGGTATAATGTTGAAAAGTACCAGTGTCGGTTGTGTGATAAAAAATTCGCCCAGAAACGTGGCCTGGACCAACATCACATAAGAATTCACAAAGATGGGGGTAAAAAGTTTGTTTGTGATATTTGCGGCAAGGAGATTCACTCCAAGGAGAGCCTTAAGGGTCACATGAACATGCACCAAGGGGCTAAGCCAGTGAAGTGTCCGCAGTGTGATAGGACCTTTGCCTTGAGGAGTACGATGAAGCAGCACTTGCTGACGCATACTGGTCAAAGGCCTCATAGCTGCAGCATTTGTGGTAAAGGGTTTACCCAGCGTGGGCCTTTGAAGGTCCACTTGAACAACCACTATGGGCAAAAGCCTTTCAGTTGTGATTTGTGTGGAGAGGGCTTTGTTACCAAGACCCAGCTGGATTATCATGTGATCATCAAGGAGTACCGCGCCAAGGACTTCAAGGGCAAGCCTATAGAGTGTCCTCTATGCCATAAGATTTGCAAAAACGAAAAGTTCCTCAAAAAACACATGGTTTGTCATTCAAACATCCGTCCTTATGAGTGCAGACAATGTGGACGAGCCTTCAAGCGCTCCCACGAAGTGAAGAACCACATTGAGTCCGTGCATGAGAAAAGCAAAAAGTTCCACTGCAACCAGTGtcctaaaatatttaaaaccaaGCATGGGTTTTTGGACCATGTCAATAGACACCTGAAGCAATTTGTGGCCCATTGCCAGGAATGTGATAGAGGATTCGTGACCAAACAGGAGTTTGAGGCACACAACAACAAGCGCCACAACGCCAACAGAGAAATCCTGGTTTGCTTTGTATGTGGCAGAACCTGCGTTGACAAGGCATCCCTAACTGGCCATCTCAGAACCCACGAGCCAGGCTACCACGACGAAAAGTTCAAATGCGAACACTGTGGAAAGAAGTTTGCTCAGAAACGCGGCCTTGACCACCACTATGTAAGAATACACAAGGATGGAGGGGAGAAGTTTATATGCGACCTATGCGGCAAGGAGGTCAACTCCAAGCGCAGCCTCAGAGGTCATATGTTGCTGCATGAGGGAGTGAAGCCGTTGCAGTGTCAGCAGTGCAACAAGAGCTTTGTACTGGAGTCCACCTTGAAGCAGCATCTTCTGACGCACACCGGAGAAAGGCCACATAAGTGCGAGTATTGTAGCAAGTGTTTTACGCAAAGGGGGCCTTTGAAGGCCCATTTGCGAAGCCATACTGGAGAGTTGCCATATTTGTGCTCGTTTTGTCCAAGTGCTTTTGGATCGAAGGCTCAATTGAATTACCATGCCAAACATAAACATCAGTATACGTTCACCTACAAATCACCACGCCCTCGTAAATCCAGAAGGCGCAAAACCCGAGGCAACTTCCTCGAACCTATAGCCCTAATGGCGCACTCCCTGGATGCTGTGCCCTTTGACGACACCGAAAACCACCATCTGGATTCAAAGAATATTTATTGCATCCTATGCCAGAAACAGTTCAGGACCAACAAAGAATTCCGCAGACACGTCAGAGTGGTTCACACCATCACCCGTTCCTTCACCTGCGACCATTGCCCCAAGAGTTTCAAAACAGCACATGCGCTCAAACAGCACTTGGAGATCCACAACTCCAACAGGAAGCTCCATAAGTGCGAGATATGCGAAAAGGAGTTTACGTCCAAAGCCATTTTGAACTTCCACGTGAAGCGGCACAATAACGACTTCGAGTTCAAGTGTGACATATGTGATAAGAGCTACGTTTCTAGGGATATTTTGAAATTGCACCAGAAAACCAAACATGGGGACCCCGTACTGTGTACGGTGTGCGGTAAAAAGTTCAGCGCCAAAGTCAACTTGCAAGTGCACATGAGGATTCACGATCCCAACTTTAAGCGTGGTTCGGTTAAGTGTGACCAGTGCGACAAGGTGTTCGATACTGAACAGAACCGGTATGCGCATGTCAAACGGCAGCACTGTAGCAATAAGACGTATATTTGTGACATTTGCGGCAAGGTGCTGAGTAAGTCTGGTAGTATGAAGCTGCACAAGCTGACGCATCAGGATGACAAGCCGCTGGAGTGCGAGGTGTGTGGGAAGAGGTTTTTGAGGAGGTCCACCTTGAGATCGCATGTTTATACGCATACGGGGGAGAAGCCGTTCAATTGTTACTTTTGTGAGCAGGCTTTTACTCAGCAAAGTGCAATGAAGAGGCATATCAAGGCGGTGCATAATATTGCTAAGCCCTTTGCCTGTAGGTTTTGTGAGGAGGCGTTTGATAATAAGAATTACCTCACTAATCATGAAAAGGCCAATCATCAGGCGTTGTTGTATGGATGTTGA
Protein Sequence
MLLLWLLGVAAVCDNAALTFLKLSSKQCLLGGLVDVASNSLRATGLWSWFGWIALVGTLVGCLVGSGCEIITISVEDSPVRKFKCFVCMQIFPSKTELIQHVAAHTRDVSKKFKCSSCNRSFNTQPDLDIHEFMRHNTEKSCPFCYEILPNKETYNVHVKQYHLQDFNHFCTLCDEGFVLASDYKHHRETTHEPMKPCKVCGLRFPSTRDLREHARQHEMDGKRPDQRCQICQTLVKDLNRHHMQNHTDNKQFVCDLCGKRFKEKAGLQLHLNVHNNVRPHKCEDCKKGFLTKQLLRVHRRKHTGEKPYECDVCGKKLTRRGGLVRHFTIHTGDKAYTCQFCGKKFARRHYLISHCKAIHGADVQSNIFPTQLEDGNSYYSRLPLLVTIKEEPLDSPKNLFQCTFCQKIFNRKKNLSRHLLTHKSERPFKCTTCQKTFKAKNVLVNHEKIHQERVKFQCDICQKRFVSQASMKVHIMRHTNQFVVSCEMCGQGFFSYAQYNSHLESAHFNQIICEVCGKQFSNKYNLKHHMDLMHSDTNNMETCPVCQKQVKFLQRHMRRSHTVKMPRKPTLCDLCGKEFKTKEGLKMHLMKHKGIKPHKCEYCGKSFTIKDNLRLHIRTHTGEKPHECPVCHKCFSQITPMKVHMRLHSGEKPFECGLCNMKFTSKTLLNIHRKNRHNDPSTLCQVVIKQEDEKPFQCNQCSKNFMLKKYLIRHIKNHTRGLTRPFRCSHCDKGFSSNYGLKSHMQVHQDLPANFACDLCPKKFKRHKNLLLHVKRHTKDYVVTCAECNIGFVCKGDYLQHLRSKHDVNKEKMVCFICGREFIKGHFKRHMLNVHGDKGHFPCELCGKVFDRQIGLQRHVKMFHNLIPHVCEICGQEFRWKHSLRDHLKGHSGHKPFQCPYCEKAFIRSDFLKQHIRVHTGQRPFECQECGKGFTQATPLKGTRNIKQCQVCQKFFKDTRSLNKHLIAHQIERPYKCNLCQKGFKRKYDISIHMAVHGQHATFNCNFCPKTFKSKQAFLVHKSRHLKKYVITCQACNKGFVTKHEYYKHRGYKHGNNPNVCEVCGRACYDKTALVNHLKTHEDGYNVEKYQCRLCDKKFAQKRGLDQHHIRIHKDGGKKFVCDICGKEIHSKESLKGHMNMHQGAKPVKCPQCDRTFALRSTMKQHLLTHTGQRPHSCSICGKGFTQRGPLKVHLNNHYGQKPFSCDLCGEGFVTKTQLDYHVIIKEYRAKDFKGKPIECPLCHKICKNEKFLKKHMVCHSNIRPYECRQCGRAFKRSHEVKNHIESVHEKSKKFHCNQCPKIFKTKHGFLDHVNRHLKQFVAHCQECDRGFVTKQEFEAHNNKRHNANREILVCFVCGRTCVDKASLTGHLRTHEPGYHDEKFKCEHCGKKFAQKRGLDHHYVRIHKDGGEKFICDLCGKEVNSKRSLRGHMLLHEGVKPLQCQQCNKSFVLESTLKQHLLTHTGERPHKCEYCSKCFTQRGPLKAHLRSHTGELPYLCSFCPSAFGSKAQLNYHAKHKHQYTFTYKSPRPRKSRRRKTRGNFLEPIALMAHSLDAVPFDDTENHHLDSKNIYCILCQKQFRTNKEFRRHVRVVHTITRSFTCDHCPKSFKTAHALKQHLEIHNSNRKLHKCEICEKEFTSKAILNFHVKRHNNDFEFKCDICDKSYVSRDILKLHQKTKHGDPVLCTVCGKKFSAKVNLQVHMRIHDPNFKRGSVKCDQCDKVFDTEQNRYAHVKRQHCSNKTYICDICGKVLSKSGSMKLHKLTHQDDKPLECEVCGKRFLRRSTLRSHVYTHTGEKPFNCYFCEQAFTQQSAMKRHIKAVHNIAKPFACRFCEEAFDNKNYLTNHEKANHQALLYGC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-