Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.043 79 5.0 1.0 12 29 25 42 13 54 0.76

2 11 0.0075 14 7.4 2.1 14 30 55 71 47 82 0.81

3 11 0.028 52 5.6 3.9 13 39 84 107 75 116 0.71

4 11 3.4e-05 0.063 14.9 3.0 12 44 113 142 105 142 0.88

5 11 0.00036 0.66 11.6 0.1 18 44 150 173 145 173 0.94

6 11 3.1 5.7e+03 -1.0 2.7 16 44 178 203 174 203 0.81

7 11 0.23 4.3e+02 2.6 3.9 9 44 201 233 192 233 0.75

8 11 0.00083 1.5 10.5 5.9 10 43 232 262 226 263 0.88

9 11 1.7 3.1e+03 -0.1 1.2 17 28 268 279 261 292 0.81

10 11 0.38 7.1e+02 2.0 1.1 14 27 295 308 285 321 0.81

11 11 0.0028 5.2 8.8 1.9 12 43 323 351 312 352 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.043	79	5.0	1.0	12	29	25	42	13	54	0.76
2	11	0.0075	14	7.4	2.1	14	30	55	71	47	82	0.81
3	11	0.028	52	5.6	3.9	13	39	84	107	75	116	0.71
4	11	3.4e-05	0.063	14.9	3.0	12	44	113	142	105	142	0.88
5	11	0.00036	0.66	11.6	0.1	18	44	150	173	145	173	0.94
6	11	3.1	5.7e+03	-1.0	2.7	16	44	178	203	174	203	0.81
7	11	0.23	4.3e+02	2.6	3.9	9	44	201	233	192	233	0.75
8	11	0.00083	1.5	10.5	5.9	10	43	232	262	226	263	0.88
9	11	1.7	3.1e+03	-0.1	1.2	17	28	268	279	261	292	0.81
10	11	0.38	7.1e+02	2.0	1.1	14	27	295	308	285	321	0.81
11	11	0.0028	5.2	8.8	1.9	12	43	323	351	312	352	0.77

Coding Sequence: ATGGAACTGGTAATCAAATCAGAAGAAATCGACATTTTTCTTGAACATGAACCACTCGACATCCAAGAAGAAATTGAAGAGTACATCATCAAATGTTCATTTTGTGACAGTACGTTTACGCATAATCACCTATTGCAAGAACACGTCAAAGCCAATCatctcgagaaaaaaatcaactgcCAATTTTGTGATAAACAGTTCAATGTTAAGAACAGTTGGAGAAAACATTTAAGCCTTTATCACGCGCAGCAGCAGGAGAAGTTTGAATGTCACTTTTGCCAAAAGGCTTATATGTACAAGAATAGCTTAAATCAGCACATACAAATGCACATTGACAACAATCATAAAAAATTCCAATGCGAACTATGTGATAAGTCGTTTGAGTACACCAAAAGCTTAAAGGCACACATCAAGTCGCGGCATTCTGACAACAAGCCTGAACTCTTGCAGTGTGTTTTTTGTGATAAGTCATTCACGCGCAAGGATAATTTACTTTATCACATCAAGAAGGTCCACTCAGATAAGGACGAAAGGTCACGTTGTGAcgtttgtttgaaaatgttcaagcaTAAGGATAGTTTGCACAGACATTTCAAGCAACAGCATTCGGATAATAACGAAatattcaactgtcagtttTGTGATAAGTCCTTTAAAATCCCATACTATTTACGTAAGCATGTAGAGAGGCAACATTCTACAATCGACGATAGATTAaagtgtgaattttgtgatAAGACTTTCACGCGTAAAGATTGCATGCGCAATCACGTCAAACTAaagcacttgaaaaaaattacttttacgTGTAGCTTTTGTGACAAGGGTTTCAAAAATAGGTATTATTTGGATATGCATGTTAAGATACATCATTCGGAGGGTAATGAGAGTTTCAAGTGTGGTATTTGTGAGTCGGTTTTCAAGCATGAGTTTTACTTGCGCAGACATGAGAAGCTGCATCATACGGTGGAACATGACAGGGCTtattgtgaattttgtgataAGTCTTATAAGTATAAGGGTGACTTGGGTAAGCATGTTAAGAAAGCACATTCGGAAAATGTTAATGTGGTGTTGTAA
Protein Sequence: MELVIKSEEIDIFLEHEPLDIQEEIEEYIIKCSFCDSTFTHNHLLQEHVKANHLEKKINCQFCDKQFNVKNSWRKHLSLYHAQQQEKFECHFCQKAYMYKNSLNQHIQMHIDNNHKKFQCELCDKSFEYTKSLKAHIKSRHSDNKPELLQCVFCDKSFTRKDNLLYHIKKVHSDKDERSRCDVCLKMFKHKDSLHRHFKQQHSDNNEIFNCQFCDKSFKIPYYLRKHVERQHSTIDDRLKCEFCDKTFTRKDCMRNHVKLKHLKKITFTCSFCDKGFKNRYYLDMHVKIHHSEGNESFKCGICESVFKHEFYLRRHEKLHHTVEHDRAYCEFCDKSYKYKGDLGKHVKKAHSENVNVVL

Sequence clustering based on sequence similarity using MMseqs2