Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.34 6.2e+02 2.1 0.4 15 28 62 75 56 86 0.73

2 7 0.0011 2 10.1 0.3 14 41 97 121 92 124 0.88

3 7 0.044 80 5.0 0.1 15 42 134 158 128 158 0.86

4 7 0.083 1.5e+02 4.1 0.2 12 40 167 192 163 194 0.74

5 7 0.0033 6.1 8.6 0.1 18 42 207 228 197 228 0.85

6 7 0.0039 7.2 8.3 0.5 14 42 240 265 235 266 0.87

7 7 0.0016 3 9.6 0.3 14 42 276 301 270 303 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.34	6.2e+02	2.1	0.4	15	28	62	75	56	86	0.73
2	7	0.0011	2	10.1	0.3	14	41	97	121	92	124	0.88
3	7	0.044	80	5.0	0.1	15	42	134	158	128	158	0.86
4	7	0.083	1.5e+02	4.1	0.2	12	40	167	192	163	194	0.74
5	7	0.0033	6.1	8.6	0.1	18	42	207	228	197	228	0.85
6	7	0.0039	7.2	8.3	0.5	14	42	240	265	235	266	0.87
7	7	0.0016	3	9.6	0.3	14	42	276	301	270	303	0.85

Coding Sequence: ATGGGTAAACCACCATTTGATCCAAGAAATGACTTTCACCAAGCCATGCTTGGCACCAGTAACCCCATAGCTGAGGAAGTTGATCATGATGAAATGGAACAAATACTAGATTTAACAGCCATTGAAGATGCTGAGGAGTTTGATAATGAGGATTACGATATGTCCTATAATAACATGCCCAATTCGGACATTGTTTGTGAAATTTGCAACACAGGGTTCAGTCATTTGTCTTCATTGAGGTACCATCGGAAGCATCGGGTTTGTCTGAAACCCAGAGTGGATCCCGAATCCAAAATTCTCAAATGTGAAAAGTGCGAGAAGGTTTTTGCCACTACAACTGGATATAAGTACCATGTACGGCGGAGCGTGTGTGAGCAAGAGGAGGCTAATAGTGAACCAAAGGTGTTTCAGTGCCAGCAATGTAGCAAAGTGTTTGCCACCAATACTGGCTTGAAGTACCACACCAGGAGGAAAGTGTGCGAACAAGTTGAAGAGGAAAAAGAAGAGGAAATTATTAAGTGTGAGAACTGCGAGGCAGTTTTTCGACAGAGGAATTCCTTGAACTATCATATTAATCATCAAGTGTGCTTGAAGCCTAAAAGAGAAGCTCAAGAGCTGTTATGTGAACAATGCGACAAAGTCTTTTCCACCACCACTGCCCTCAGTTACCACCTCAAACACAACGTTTGTGGACCCAAAGAACCAAGAGAGCCCAAAGaagaaataaAGCAATGTCACCTGTGCAGCGCCACATTCCAGCACACCAACTCACTGCGATACCACTTACAACATCGGGTGTGTCTCAAGGCCAAACttgAACAACAACCCAAGATACTCCAATGCGAAAAGTGCGATAAAGTGTTCACCAGTAGTACGTCGCTTGATTACCATATGAAGAGGAAAGTGTGCGAACAACTAAAAAGCCAAGTCCAAGGCCCTCCATTTGTGTGTGATATGTGTTTCACTTCGTTCGAGCTGCGGCAAACCTGGTATGCACATGTACAAAGGCAAGCTTGCAGGAAACATCCGGAAAGATATGTGCAGGATAATCAGTTTGAAATAAGTGTTAAAGTTGAGCCGCCTGAGTGA
Protein Sequence: MGKPPFDPRNDFHQAMLGTSNPIAEEVDHDEMEQILDLTAIEDAEEFDNEDYDMSYNNMPNSDIVCEICNTGFSHLSSLRYHRKHRVCLKPRVDPESKILKCEKCEKVFATTTGYKYHVRRSVCEQEEANSEPKVFQCQQCSKVFATNTGLKYHTRRKVCEQVEEEKEEEIIKCENCEAVFRQRNSLNYHINHQVCLKPKREAQELLCEQCDKVFSTTTALSYHLKHNVCGPKEPREPKEEIKQCHLCSATFQHTNSLRYHLQHRVCLKAKLEQQPKILQCEKCDKVFTSSTSLDYHMKRKVCEQLKSQVQGPPFVCDMCFTSFELRQTWYAHVQRQACRKHPERYVQDNQFEISVKVEPPE

Sequence clustering based on sequence similarity using MMseqs2