Orus043027.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293311.1:4100837-4111260[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0067 12 7.6 0.3 17 34 41 62 22 64 0.83 2 10 0.0007 1.3 10.7 3.1 16 43 119 143 107 144 0.86 3 10 0.0079 14 7.4 1.0 11 44 144 174 141 174 0.87 4 10 0.0088 16 7.2 1.8 18 43 181 203 178 204 0.90 5 10 0.00073 1.3 10.7 0.7 5 44 197 234 194 234 0.82 6 10 0.0013 2.3 9.9 1.8 15 43 238 263 236 266 0.87 7 10 0.007 13 7.5 2.7 11 44 263 294 255 294 0.82 8 10 0.0088 16 7.2 1.8 18 43 301 323 298 324 0.90 9 10 0.00073 1.3 10.7 0.7 5 44 317 354 314 354 0.82 10 10 0.0014 2.6 9.8 0.5 15 44 358 384 356 384 0.93
Sequence Information
- Coding Sequence
- ATGGACTTGGATGAAGATGAAACGCAGTTCGAAGAAATCTTCAGCGATCAAGCAGGATTCAAATGTGAAAAGAGTCTTAAACTACATGTGAATTCTCTACATTTGGAAGACGTAGATGGAGTTACTTGCAATATCTGTAAAAAGTCTTTCAAagtAACTACATATATATCTGAAGAAACTCAAAATTTCTTGGGAGACATCAAGGAAGAAGAACCACTTGAGATTAAAGAAGAATCGATGGACTTGGATGAAGATGAAATGCAGTTCGAAGAAATCTTCAGCGATCAAGCAGGATTCAAGTGTGAAAAGAGTCTTAAACCATATGTGAATTCTCTACATTTGGAAGACGTAGATAGAGTCACTTGCAATATCTGTAAAAAGTCTTTCAAGCATAGAGACAATCTTAAGAGGCATGTCAAAGTACTACACTCCACCAGTGATGAAAGTgtcaaatgtgaattttgcgacacgACTTTCAAGACTAAAATCTACTTGCAGAAGCATGTTAAAAGGCAACATCCGCCCATTGTTGAACTATCAAAATGCGACTTTTGTGGCAAGTGTTTTAAACGTAAAGAACGCCTCAAAAGTCATGTCAAATTTGTTCACTCGAACAATGATGAGAGTCTCAATTGTGgattttgcgacaagactttcaagaatAAAGATGCATTGAGAAATCATGTTAGAGGAGTACATCCGCCGGTTCTGAAAGTAATAAAATGCGACTTTTGTGGCaagtgttttaaaaataaagaaggCCTTAAAGCTCATGTCAAATTTGTACACTCGCACAATGATGAGAGTctcaaatgtgaattttgcgacacgACTTTTAAGAATAAATTCTACTTGAAGAAGCATGTTAAAAGACAACATCCGCGCATTGTTGAACTATCAAAATGCGACTTTTGTGGCAAGTGTTTTAAACGTAAAGAACGCCTCAAAAGTCATGTCAAATTTGTTCACTCGAACAATGATGAGAGTCTCAATTGTGgattttgcgacaagactttcaagaatAAAGATGCATTGAGAAATCATGTTAGAGGAGTTCATCCGCCTgttctgaaaataataaaatgcgaCTTTTGtgactcaaatttcaagtttaaaACGAGTTTGAATCGGCATGTCAAGTCGAAACATTCAGATCAACAGGTTGAAGAAAATTATCAGCCTCAGACTTAG
- Protein Sequence
- MDLDEDETQFEEIFSDQAGFKCEKSLKLHVNSLHLEDVDGVTCNICKKSFKVTTYISEETQNFLGDIKEEEPLEIKEESMDLDEDEMQFEEIFSDQAGFKCEKSLKPYVNSLHLEDVDRVTCNICKKSFKHRDNLKRHVKVLHSTSDESVKCEFCDTTFKTKIYLQKHVKRQHPPIVELSKCDFCGKCFKRKERLKSHVKFVHSNNDESLNCGFCDKTFKNKDALRNHVRGVHPPVLKVIKCDFCGKCFKNKEGLKAHVKFVHSHNDESLKCEFCDTTFKNKFYLKKHVKRQHPRIVELSKCDFCGKCFKRKERLKSHVKFVHSNNDESLNCGFCDKTFKNKDALRNHVRGVHPPVLKIIKCDFCDSNFKFKTSLNRHVKSKHSDQQVEENYQPQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01107751; iTF_01107825; iTF_01107829;
- 90% Identity
- iTF_01107751; iTF_01107825; iTF_01107829;
- 80% Identity
- iTF_01107751; iTF_01107825; iTF_01107829;