Orus004144.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293303.1:44697417-44698055[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-09 1.6e-06 29.3 0.1 1 38 18 55 18 60 0.89 2 2 5.6 2.4e+03 -0.0 0.0 12 21 131 140 129 144 0.84
Sequence Information
- Coding Sequence
- ATGCCTACAAGATATAAAAGAAAGACCGGTGCCCCTCAAAGACGACAATGGACCCAAGAAAGCTTGGTGGAAGCTCTTAGAAGTTTAGAAGCTGGCGAGATGGGTATTGATGAAGCTGCCCGTCATTATGCCATTCCTTCAAGAACCCTTCGAAGGCGAAGAGAAACCGGCATTGTTTCTGATATTCCCCTTGGTCCACAGGGAATATTGGGCATTGCAAATGAGAAAAGATTGGTAACTCATATTCAGAAACTCGAGAAGGTTGGATTTGCTCCTGATCGCGACACGATCCGAAGTTTGGCATACCAGTTCGCCGAGAAAATAGGAATTCGCCACAAATTCAATGGAGAGACAGAAATGGCTGGTTATGATTGGCTAGAATCTTTTCTGTATAGAAATAAAGAGTTGAGCATCAGAAAATCTCAAGGTTTGTCACTTGCTAGATGTGAGGGCATGAATAGAAATGAAGCAAAAcagtttttcgaaattttaactGCTGTCTTCACGCAATTCAACATGTTTGAAAAGCCGGGAAACATATTCAACATGGATGAGTCCGGATATCAGATAAATAATGAGGCGGGTATTGTTATCGCAACCAAACGTGCCAAAGACGTGCACACTATAATGTGTAACTAG
- Protein Sequence
- MPTRYKRKTGAPQRRQWTQESLVEALRSLEAGEMGIDEAARHYAIPSRTLRRRRETGIVSDIPLGPQGILGIANEKRLVTHIQKLEKVGFAPDRDTIRSLAYQFAEKIGIRHKFNGETEMAGYDWLESFLYRNKELSIRKSQGLSLARCEGMNRNEAKQFFEILTAVFTQFNMFEKPGNIFNMDESGYQINNEAGIVIATKRAKDVHTIMCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -