Orus041853.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293310.1:22137289-22138878[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.7e-12 2.4e-09 38.3 0.0 1 39 18 56 18 61 0.93
Sequence Information
- Coding Sequence
- ATGGTCCGCCACTACAAAAAAACCCCGGGAACCAGAGTTTATCAGAATTATAGTGAGGAGACATTAAGAACAGCCCTCAATCAAATTCGACGAGGTCAGATAGGTATACGAGATGCCTCACAAGTGTTTGGCATTCCAAAATCGACTCTGGCAAGGCATAATAAAGGACCTTTGAAGAAGCAGGGGGGGCCAACTATCCTGacacaagatcaagaacaacattTGGTTCAACTGATAGTATTAGCAGGTGAATGGGGTTACCCATTGGATAAACTGGATCTTCGAAATACTGTCAAGGGCTACCTAGATAGGAAAGGtgtgaaaattgtcaaattcccAAACAATTTGCCAGGAGTGGACTGGGCAACTTCTTTTATTTCCCGACATAAGGATGTCCTTACACAGAGACTGTGCGAGAATATTAAGAGGGCCCGCGCCGGTGCTTCGCAGGAGACAgtaaatttatattttgacaatttgCAAAACCTCTTGGAAAATGTTGAACCAAACTCCATTGTCAACTATGACGAGACGTGTTTTGTTGATGACCCGGGAAGAAAAAAAGTGATAGTGAGACGAAAAACTCGACATCCTGAACGGATAATTGACTCAGCAAAAAGCTCCACGTCGGTAATTTTTGCAGGAAGTGGTGGTGGTGTTTTACTACCACCATTTATCGTCTACAAGAGTGAGCACATTTATGACACTTGGATGTTGAATGGGCCAAAAAACGCAAGATATGGTAGAAATTCTACTGGCTGGTTTGACCAAcctctttttgaaaattggtttcaAAATATCGCCCtgccatatttgaaaaaacagtcTGCCCCAAGAGTTTTAATTGGTGACAACCTGTGTAGTCACCTTTCATTGAATGTCATAAAACTCTGTGAACAAAATGATGTTAAGTTTGCGTTTTTACCTTCCTCATCAACTCATCTGACCCAACCAATGGACGTCGCTgtttttgcacctttgaaaAAAACCTGGCGGCGTGTTCTGGAagattggaagagaaaataTAAGGGGCCTATACCAAAGCAATATTTCCCAGGATTGCACAAAAACACCCTAGATAATTTGCCAACGATGAGTGAAAATATTAGAAAGGGATTCATGGGCACAGGGCTTATTCCACTAGATAGAAATCAAGTTTTGAAAAGATTGCCAAAGCCTATAGGTGCGGCAGATGAAGATCCCAATCATTGGACAGCTTCTGTTATCGATTTGCTCTATGACTCCAGGGCTGCATGTAAACCAGCAGTAACGAGAAAAAGAAAGGTCACCGTAGAACCAGGAAAAAGCGTTAGAAAGGAAGACTTTGCTGAAATTGAAACTTTCCTGCTCAATAACTGCAAGACTGCTCGTAAACCAAAAGTAACGAGAAGAGAAATCACCGTGAAACCAGGAAAAAGCATTTCAAAAGAAGACTTTGCTGAAGCTGGACCGTCCTCATCAAGAAATAAGGCTGTGATCGAAGACGAATTTGAAGAGTCCGAATTGGAAAATGCAGCAAATTCCGTATCTTCCTCCGATAGCGAAATGGATGAATCAAGGGATGAATTGAATCTGGAGAATCTTTGTTGA
- Protein Sequence
- MVRHYKKTPGTRVYQNYSEETLRTALNQIRRGQIGIRDASQVFGIPKSTLARHNKGPLKKQGGPTILTQDQEQHLVQLIVLAGEWGYPLDKLDLRNTVKGYLDRKGVKIVKFPNNLPGVDWATSFISRHKDVLTQRLCENIKRARAGASQETVNLYFDNLQNLLENVEPNSIVNYDETCFVDDPGRKKVIVRRKTRHPERIIDSAKSSTSVIFAGSGGGVLLPPFIVYKSEHIYDTWMLNGPKNARYGRNSTGWFDQPLFENWFQNIALPYLKKQSAPRVLIGDNLCSHLSLNVIKLCEQNDVKFAFLPSSSTHLTQPMDVAVFAPLKKTWRRVLEDWKRKYKGPIPKQYFPGLHKNTLDNLPTMSENIRKGFMGTGLIPLDRNQVLKRLPKPIGAADEDPNHWTASVIDLLYDSRAACKPAVTRKRKVTVEPGKSVRKEDFAEIETFLLNNCKTARKPKVTRREITVKPGKSISKEDFAEAGPSSSRNKAVIEDEFEESELENAANSVSSSDSEMDESRDELNLENLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01107129; iTF_01107130; iTF_01107133; iTF_01107135; iTF_01107134;
- 90% Identity
- iTF_01107130; iTF_01107133; iTF_01107134; iTF_01107135;
- 80% Identity
- -