Orus030617.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293306.1:48165837-48170639[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.2e-10 2.6e-07 31.8 0.0 1 39 160 199 160 203 0.90 2 4 6e-13 2.5e-10 41.5 0.1 1 39 214 252 214 255 0.95 3 4 4.4e-18 1.8e-15 57.9 0.0 1 45 269 314 269 314 0.98 4 4 6e-16 2.5e-13 51.1 0.0 1 39 321 360 321 364 0.94
Sequence Information
- Coding Sequence
- ATGAGCAGCCATGGACTCATGGCAGGACAGACGATCTTCTCCACCTTCGACACCGATGACTTCCCTCCCGAACCTCAAGCCCCATCTGCCATACCAGTGGGCCATATGGACATGTCCGAGCATACCTCCACCATGCTCACCAATGTGCCCATTCATCGCACCGATTTGGACTCTACCAAATATGCAGTTGAAATCAAAGAGGAACCTGAGATTAAATTCGAAACGCTCCACTCGTACGACCAGGACAGTCTGCTGGAGATGGAGTCGCACATGAGCGGCGACCATTCTCTGGGTTCCCACGAGGATGTCAAGGATCTTCACCATTCCAGCCTTATGTCGTCGGACTATACGCCCAACATGATACAGATACACACCTTAGATATGGAAACAAGTGATAATGGGGATTTGCCCAGTACAAAAGCCAACGGTGACCAACAAAATGGACGGTCCAGCAGTGCTGGTGGGCCTAAAACCTGGACGCAAGAAGACATGGACATGGCGCTCGATGCCTTGAAGAACCACAACATGAGCCTCACAAAAGCGTCAGCCACCTATGGCATCCCATCTACGACTTTATGGCAACGTGCCCACCGCCTGGGCATAGACACGCCCAAAAAAGAAGGTCCTACCAAGTCCTGGACAGAAGAAAACCTCAACAATGCCTTGGAAGCCTTGCGCAGCGGCACCATTTCCGCCAACAAAGCCAGTAAGGCTTATGGTATCCCAAGCAGTACCTTGTACAAAATAGCGAGAAGAGAAGGTATAAGACTGGCAGCACCGTTCAATGCAGCACCCACCACATGGACACCTGAAGACTTGGAAAAGGCTTTGGAATCGATTCGAACAGGCCAAACGTCCGTCCAGAAGGCGTCTACGGAATTTGGTATTCCCACGGGAACTCTGTATGGGAGGTGTAAGAGGGAGGGGATTGAGTTGTCCCGGTCGAACCCGACTCCTTGGTCGGAGGATGCTATGGGGGAAGCTTTGGAAGCAGTCAGgTTAGGCCATATGTCCATCAATCAAGCAGCCATCCATTATAATTTGCCTTATTCGTCATTATATGGTAGATTTAAAAGAGGAATCAAGTACGACACTGACAATATAGAGATTCAACAAGACACAACCCAGCAACAACACATGGACATGCACACTTACGGCACTTTAGAATTTAGCAACGGACAACCAGTGCCGGTAGTGCAACAAATTCAGTACCAACAACAAATGCAACATCAGCCAAATAGCTGA
- Protein Sequence
- MSSHGLMAGQTIFSTFDTDDFPPEPQAPSAIPVGHMDMSEHTSTMLTNVPIHRTDLDSTKYAVEIKEEPEIKFETLHSYDQDSLLEMESHMSGDHSLGSHEDVKDLHHSSLMSSDYTPNMIQIHTLDMETSDNGDLPSTKANGDQQNGRSSSAGGPKTWTQEDMDMALDALKNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRSGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDTDNIEIQQDTTQQQHMDMHTYGTLEFSNGQPVPVVQQIQYQQQMQHQPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -