Ocom069024.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- nfx1_1
- Assembly
- GCA_035357415.1
- Location
- CM068991.1:16380904-16383320[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 1.5 5.1e+04 -3.2 3.0 6 10 362 366 358 366 0.61 2 6 4.7e-05 1.6 11.2 18.8 3 19 406 422 392 422 0.90 3 6 0.42 1.4e+04 -1.4 0.6 5 10 447 452 447 452 0.95 4 6 4.9e-08 0.0016 20.8 16.3 1 18 458 475 458 476 0.98 5 6 0.61 2.1e+04 -1.9 1.2 6 10 506 510 505 510 0.90 6 6 5.1e-08 0.0017 20.7 9.1 1 18 516 533 516 534 0.97
Sequence Information
- Coding Sequence
- ATGTCGTTTTacgaaaatcaagaaaataatcATCCAAGCAGCAGTTTTACCCCAActgaaagttattttaataataggGCTCAAAATTGTTTATCAAGTTCTCAGAATAGTGCATTTATAAGGAATTCTCCTGTTGATATATCACGCTCTACCCTAGAACCAACTGCCAGTGAATTTTTTCCCACATCAAATGTTTCCAATAGTAATAATGGTGCTATTAAGAAGCCCCAAAATAAATTGAAGAATAAAGAACACAATAACTGGAGAAATCgatATGGAAGTGGAAGAACCTTTAATAATTCTAGACAAAACTGTAGTACATTTAACAGAGATGAGTTTGCTTTTCCCAAATATCAAAGATTTAATCATTCACAAAAAAAGGAAGAACAGCAGCAAAAATTTAATGGGAGATATGAAGATAATTCAGTTTATAAAGATCAATATAATTATGAATATAGCAACATTAATCAATCAGCAGGATcttcaagaaattttaaaaatactaagaGATATGAAAATGATCAAGgaaaattaaatgaaagaaGTTCTAGAAactttgatgaaaaaacaagttactacaaaaaacaaaaccatttttcatataataATGATGACTCTAGATATGAAAATGATCAAGGAAAATCAAATGAAAGAAGTTCCAGAAactttgatgaaaaaacaaGTAGCTACAAAAAACCAAACCAGTTTTCATATAATAATGATGAATCTAGCCATAGAAAAATAAACCAGAATAAAAAAAGTAGTTATAGATCATACAGCTCTAGAAATGGTCAAAAATTAAGAGATGATAATGGATTTAATAACTGGAGGAAAGAAAACGTAGAAAGAGATCATTTTCCCAGTATTACTAAAGCCAGAAAAAAATtaAATGCTGCATCACAAAGAGAGAGACTGGTTGAAATGCTCAATCATAAGATGCTAGAATGTCTTGTATGTTGTGAAAAAATCAAACACACAGATAAAATTTGGTCATGTTTGCTATGCTATCATATATTTCATCTTCATTGTGTGGTTGCTTGGGCTAAGTCATCTAAGGAAGAAAAGGGTTGGAGGTGTCCAGCCTGTCAGAATGTTTGCAGTGAAGTTCCAGAACAATACAAGTGTTATTGTGGTAAAACTGTTGAGCCTagGTTTGAACCAGGAGTAATCCCTCATGGCTGTGGAGATATGTGCCTGCGTAAGGGTCGTCATTGTAATCACAAATGTTCAATTCTGTGTCACCCTGGACCTTGTCCAGATTGTACAGTAATGATTTCAAAATCTTGTGGCTGTGGTTCTACCCAACAAATGGTAAAATGTTGTACCAATATAGAATTAACATGCAATGCTGTTTGTAACAAATTATTAGAATGTGGTTTGCATCACTGTGCACAGCCTTGCCATGTGGGTGAATGCCAGCCATGTGATAAGACTATTATTCAAGAATGTTATTGTGCCAAAGAAGGAAGAAAGGTACCCTGTTCTGGTCAATACAAAGGTCAAACCACATATTCCTGTAAAGAAGTGTGCAATAAACTTTTATCTTGTGGAAATCACTATTGTAAAAAAGTTTGTCATGAATCTTCCTGTGAGACATGTTTAACAGATGTTAATAAAGTCAAAACATGTCCCTGTGGAAGTACGCCCATCGCAAAAGAACGTCTATCCTGTTTGGATCCCATTCCATGCTGTGAGAAGGTACACACCTAtgattaa
- Protein Sequence
- MSFYENQENNHPSSSFTPTESYFNNRAQNCLSSSQNSAFIRNSPVDISRSTLEPTASEFFPTSNVSNSNNGAIKKPQNKLKNKEHNNWRNRYGSGRTFNNSRQNCSTFNRDEFAFPKYQRFNHSQKKEEQQQKFNGRYEDNSVYKDQYNYEYSNINQSAGSSRNFKNTKRYENDQGKLNERSSRNFDEKTSYYKKQNHFSYNNDDSRYENDQGKSNERSSRNFDEKTSSYKKPNQFSYNNDESSHRKINQNKKSSYRSYSSRNGQKLRDDNGFNNWRKENVERDHFPSITKARKKLNAASQRERLVEMLNHKMLECLVCCEKIKHTDKIWSCLLCYHIFHLHCVVAWAKSSKEEKGWRCPACQNVCSEVPEQYKCYCGKTVEPRFEPGVIPHGCGDMCLRKGRHCNHKCSILCHPGPCPDCTVMISKSCGCGSTQQMVKCCTNIELTCNAVCNKLLECGLHHCAQPCHVGECQPCDKTIIQECYCAKEGRKVPCSGQYKGQTTYSCKEVCNKLLSCGNHYCKKVCHESSCETCLTDVNKVKTCPCGSTPIAKERLSCLDPIPCCEKVHTYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -