Ocom039597.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068985.1:2770953-2771906[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.14 50 7.0 1.1 2 19 11 28 10 30 0.94 2 12 0.16 57 6.8 0.9 1 19 35 53 35 58 0.81 3 12 0.041 15 8.7 0.7 2 19 62 79 61 84 0.92 4 12 0.37 1.3e+02 5.7 0.3 1 19 86 104 86 109 0.81 5 12 0.041 15 8.7 0.7 2 19 113 130 112 135 0.92 6 12 0.11 39 7.3 0.5 1 23 137 160 137 160 0.85 7 12 0.067 24 8.0 0.7 2 19 164 181 163 183 0.93 8 12 0.17 61 6.7 0.2 1 19 188 206 188 211 0.82 9 12 0.041 15 8.7 0.7 2 19 215 232 214 237 0.92 10 12 1.3 4.6e+02 4.0 0.3 1 19 239 257 239 262 0.80 11 12 0.024 8.9 9.4 0.7 2 23 266 288 265 288 0.90 12 12 0.033 12 9.0 3.9 1 23 294 317 294 317 0.92
Sequence Information
- Coding Sequence
- ATGAATAGGTCAAAAAGTAATTTAACTGTTACATGCCTCTACTGCGATAGACAATTTAGAGAAGTGGAACACATGGAACAACATTGCGATGATGTACATTCTTTTTCATGCCAGTATTGTGgggagttatttgcatttaaggAGGATAGAGATGCCCATGatagaaaaaaacatcttaTTGTTGAATGCCTCTACTGTGATAAAATATTTAGAGAAGTAGAACACATGGAACAACATTGCGATGCTGTACATTCTTTTCCATGCCAGTATTGTGATGAATTGTTTGCATTTAAGGAGGAAAGAGATGCCCATGATAGAGAAGAACATCTTACTGTTGAATGCCTCTACTGTGATAAAATATTTAGAGAAGTAGAACACATGGAACAACATTGCGATGCTGTACATTCTTTTCCATGCCAGTATTGTGATGAATTGTTTGCATTTAAGAAGGATAGAGCTGCCCATGATAGAAAAGAACATCTTACTGTTGAATGCCTCtactgtaataaaatatttagagaaGTAGAACACATGGAACAACATTGCGATGATGTACATTCTTTTCCATGCCAGTATTGTGGtgaattatttgcatttaaggAGGATAGAGATGCCCATGATAGAGAAGAACATCTTACTGTTGAATGCCTCTACTGTGATAAAATATTTAGAGAAGTAGAACACATGGAACAACATTGCGATGCTGTACATTCTTTTTTATGCCAGTATTGTGATGAATTGTTTGCATTTAAGGAGGATAGAGATGCCCATGATAGAGAAGAACATCTTACTGTTACATGCCTTTACTGCAATAGAATATTTAGAGAAGTAGAACACATGGAACAGCATAAAATTGCTAAACatgcagaaaaaaattattattcatgTCATTATTGTGAGCGTGAATTTAATTCTGAATCTACCAGAGATTATCATGAAAGATACTATCATTAA
- Protein Sequence
- MNRSKSNLTVTCLYCDRQFREVEHMEQHCDDVHSFSCQYCGELFAFKEDRDAHDRKKHLIVECLYCDKIFREVEHMEQHCDAVHSFPCQYCDELFAFKEERDAHDREEHLTVECLYCDKIFREVEHMEQHCDAVHSFPCQYCDELFAFKKDRAAHDRKEHLTVECLYCNKIFREVEHMEQHCDDVHSFPCQYCGELFAFKEDRDAHDREEHLTVECLYCDKIFREVEHMEQHCDAVHSFLCQYCDELFAFKEDRDAHDREEHLTVTCLYCNRIFREVEHMEQHKIAKHAEKNYYSCHYCEREFNSESTRDYHERYYH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -