Basic Information

Insect: Ophraella communa
Gene Symbol: -
Assembly: GCA_035357415.1
Location: CM068987.1:9050003-9079726[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.5 1.6e+03 2.2 1.8 1 11 137 147 137 156 0.88

2 12 0.26 93 6.2 0.2 2 20 435 453 435 455 0.93

3 12 0.44 1.6e+02 5.4 0.0 3 23 550 569 549 569 0.88

4 12 6.3e-05 0.023 17.5 0.6 1 20 575 594 575 596 0.95

5 12 0.0012 0.45 13.4 0.3 1 23 598 621 598 621 0.95

6 12 1.1e-05 0.0041 19.8 1.3 2 23 627 648 626 648 0.97

7 12 3.3e-05 0.012 18.4 1.8 1 23 654 677 654 677 0.95

8 12 0.44 1.6e+02 5.4 0.3 2 20 735 753 734 755 0.91

9 12 7e-07 0.00026 23.6 1.4 1 23 764 786 764 786 0.98

10 12 0.00015 0.054 16.3 3.7 1 23 792 814 792 814 0.98

11 12 3.6e-07 0.00013 24.6 0.5 1 23 820 842 820 842 0.98

12 12 3.2e-06 0.0012 21.6 1.8 1 23 848 870 848 870 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.5	1.6e+03	2.2	1.8	1	11	137	147	137	156	0.88
2	12	0.26	93	6.2	0.2	2	20	435	453	435	455	0.93
3	12	0.44	1.6e+02	5.4	0.0	3	23	550	569	549	569	0.88
4	12	6.3e-05	0.023	17.5	0.6	1	20	575	594	575	596	0.95
5	12	0.0012	0.45	13.4	0.3	1	23	598	621	598	621	0.95
6	12	1.1e-05	0.0041	19.8	1.3	2	23	627	648	626	648	0.97
7	12	3.3e-05	0.012	18.4	1.8	1	23	654	677	654	677	0.95
8	12	0.44	1.6e+02	5.4	0.3	2	20	735	753	734	755	0.91
9	12	7e-07	0.00026	23.6	1.4	1	23	764	786	764	786	0.98
10	12	0.00015	0.054	16.3	3.7	1	23	792	814	792	814	0.98
11	12	3.6e-07	0.00013	24.6	0.5	1	23	820	842	820	842	0.98
12	12	3.2e-06	0.0012	21.6	1.8	1	23	848	870	848	870	0.97

Sequence Information

Coding Sequence: ATGGAAATATATAATGATAATAAACTTGTAGAAGCCATAACAAATGGATTGGATAAAAAATGCCGCACATGCTTTAAAAATAATGGAGTAATGAATCTGTTTACAACTAAATTCCAGCAACTTACATTGTATGAAATGTTTCCCATATTTTCATTGCCGAAAatAGACATGTCTGATGGGTTACCTCAAAAAATTTGTGGATTTTGTGCAAAGATGATGATAGAAATGTATACCTTTAAGTTGCAAACAGATCAAATACATTCAATGTTACAAATTGCTGCTGGGCAATCACCTAATGCACCAAAACTGCCCAATGAATCAACTAAAGTAAAATGTATTCAAGATAACCAACTGAAGAATAGTGAGCCAAACAAAAATgttacagaaaataaaaattccacACAAGTGTTTACCTGTCCAGACTGTCAAGTACCATTTAAGATTTATACAGAATATGTATGTCATCGACTaaaagtaatacaaaaacaaaatgaagaaagaaaaaaaaatagctaTACCTTTGATGAAAATAATGCTGGAATAGCTAATCTGCCCAATATTGCTGTAATTAATGTGgtagatgatgatgatgataatgATGAAATAGTATTTGAAAATTCTACAATTTTACCAGCCGAATCGAATGGGGACATTCaactagaaaaaaattttttgaaactaAAAGATATTCGTAGTCTTTTAGAACATAATTATTCCAAAATTTCCGTATTAAATAATAATCTTTCACCTGTAAAGACATATTCAAAATCTAAAAACGTTAATGAagataatatttcaaaacattcaCAAGGTACTGcatcaaataataatatttcatcAGTAAAGACTTATTTAAAACCCAAAAATGCAAATGAAgataatcttttaaaacatgCAACAAACAGTAATTTATCACCAGAAAAGACTCATGTAAATGAAGATAATCTTTTAAAACCTCCTCAAGTTACTGCATCAAATAGTTATTTGTCATTAAAACAGGcttatcttttaaaaaattctcaagTTACTGCAACAGATAGTTATTTGTCACTACAACAggcttatttaaaatataaaagggAAAATATTCTAGGAGATTATTCAAAAAGTAATACGTCATTAGAAGATGCTTATTTACAATCCAAAAATGTAAAggaagaaaatgttttaaaacagtCTGCAGAAAAGGCGGATTTCAAATCCAAAAATGTAAACGAAGATAATCTATCAAAAAATTCTCAACTTATTGTACCAAAAGGGACAAATGTTGATCTTGAacctaaaaaaaactttttaaaacccAAATGTGTGGTTTGCAATCTCGAGTTTAATTCAACCGAAGAATATATTAAACACAAACAAGAAAAATCGGCGAGAAAAAAAAACTCGACATTATGCCCcttatgtaacaaaaaaatattaccaaacaaaattaaacaGCACAAATTACTCCACGAAAAATCAAAATGCCGAATGTCTGCGATGCTAGTTGATGCCGAAACAGGCGACATCTGTTGTACCGTTTGTAAAGCTAAATTTGATTCCCGACTCCGGTATTTATTACATAAaagatgtaaaaataaacagaatCAACCATCGCCTGCGAAACAAGTCAGTAGACCTAAACAAAAGGTTAGAAAAGAACCTTGTCCAATATGTAACGTAGCTTACAGCACTTCGATACTCAACGACCATATAAATACTCATACGAATTTGAAACCTTACATGTGTGAAATTTGCGGCATCAAATTCCGATTCCTGTCTAACTTGCGTTCTCACCAGCACGATAAATATTTGTGCGATGTGTGCGGCAAACTTGTCATGTCGTCCAAAAGTCTCAGGAAACATATCCTAACTACACATTCCAATGTTACGTTATCCTGCGATAAATGTAATAAGGTATTTAAGAATCCAATATCGTTGAAATACCACTTGAAACGGCATAAGGGCGAAAGGCCTTATTTGTGTACCAGCTGTGGTAAAGCATTCAGCCAAATGCCGCATCTGAAGACCCACATGAATTCCCAGCACAATAAAGAAACAATTCTCTGTGTCAGATGcaataaaaagttaatcaaaggCAAGGATCACAAATGCAGAGAGATCAGAGGGACTGAATCGCTGGAAAGATGCAAGATTTGCAACCGTGCTGTGGTAGATATGGAAACTCACGATTCCTTACACAAATTAGGACATGATTTAATGTGTGGTTTCTGTAATAAGGTATTCCTGGAAAAGGACAAACTTAAATCACACGTATACAATCGAGTGTGTTGTCGTAAATTTGAATTCTCTTGCGATAAGTGTCCGAAAAAATTTCGCACAAGAGGAAGCCTTACGGTTCACGTGCGAACTCACACTGGGGAGAGACCTTACTCGTGCGAAGAGTGCGGCAAACGGTTCGTGCAGTTCACACATCTCAGCTATCATAGGAAACTACACACTGGTGAAAAGCATTTCGAATGTCCATATTGCGAAAAGAGATTCGCTTTGAAAGGGAATCTGACACAACACATTAGAATGCACACGGGGGAAAAACCGCACGTTTGCGAATATTGTTTGAAGGGTTTTCCGACCTCGTCGTCCTTGAGAAAACATCAAAGGATTCAcgtAATTCAATGCTTCACAAAGTTTATTCATCCTCCAACAGCAACTTATTCACATTTTATCCTCAACGACAGTATTCGATACCCCTGCGTAACAGTTTGTCGACGTCCATCTTACAAAACTGAAGAATTAGCAaattttggtATTCACAGTCAATCTTTGGAGTCcagttttgcttttaaatatttcaatttttctaaaCACTCACTGACGGAATTATTGGAAAAAGCTACTTATAATTATAAGGAAATGTTTTTCCAATACGCTTATGCATCAAAAGGCGGGTCGGATTCTTCAAATGAACttATAAAACTAACAAGTATGTATCGAATAGATAGAGGACGATGTTTCACCATACAGCCGTTGCAGATGTCCAATATTTTTTCCGTCAGTGGTGggtatatgttttttttaaagcataacgTGACATCGCAGTCTATGAACGAGTATGGAATTTCTACGCACGGTTATCAATTTTATCTACACGATCCAAACGAGATTTTAACTGctgACGACGACGAAAGAAATAACTTCTTAGAATATCTTGATCTGGAAGCTTCTGAAGATATGagaattaaatttgaaattcaAGAATATAGTAAGGCTCCTACAAAAGAGAATGATTGTATCGACGATAGGGACTATAGTAGATCAAAATGCGAAGAAATGTGTGTAAATCAGCAGATtgctaaaatattaaattgcacAGTGCCGTGGATGTTGCTTCCAGAAAATGAAACCTTTGACGAATGCAATAATTATAAGACAGTGAAATTGTCTATAAAGATGTATACCAAtcAAGTAATTAGAgacaaattaatgaaaaattgcaCCTGTCCCATATCATGTAATTTTACGGTTTACAAAACATCTGTAATCAGTCGACGACCTATCGAACCTGTATTGGCACCAAATTGTGTAATTTGTTTTTACTGCACCAATTTGGTATTTAAAATGTCAGAAGTATTTGGGTACGATTCCAATCAACTTGTTGCTGATATCGGTGGATCTTTAGGATTCCTGCTAGGATTGTCTGTCCTTAGCTTGATTTGTCTTCTCGAAGAAGTATCCAAActgatatttagaatatttttcaaaggAAAAATCCCAAACATATTAAATAAGGAAGTCCAACCTAACAACCAACAAATCGAAGAcaagattttaaaagaaaaaatgaatttagCACCCGAGTATGCTAATATTACTAATTTCGTCACTAAGAATCAAAATTGTGATGATTATAGTAaccaaaatattaaagataatataaaataa
Protein Sequence: MEIYNDNKLVEAITNGLDKKCRTCFKNNGVMNLFTTKFQQLTLYEMFPIFSLPKIDMSDGLPQKICGFCAKMMIEMYTFKLQTDQIHSMLQIAAGQSPNAPKLPNESTKVKCIQDNQLKNSEPNKNVTENKNSTQVFTCPDCQVPFKIYTEYVCHRLKVIQKQNEERKKNSYTFDENNAGIANLPNIAVINVVDDDDDNDEIVFENSTILPAESNGDIQLEKNFLKLKDIRSLLEHNYSKISVLNNNLSPVKTYSKSKNVNEDNISKHSQGTASNNNISSVKTYLKPKNANEDNLLKHATNSNLSPEKTHVNEDNLLKPPQVTASNSYLSLKQAYLLKNSQVTATDSYLSLQQAYLKYKRENILGDYSKSNTSLEDAYLQSKNVKEENVLKQSAEKADFKSKNVNEDNLSKNSQLIVPKGTNVDLEPKKNFLKPKCVVCNLEFNSTEEYIKHKQEKSARKKNSTLCPLCNKKILPNKIKQHKLLHEKSKCRMSAMLVDAETGDICCTVCKAKFDSRLRYLLHKRCKNKQNQPSPAKQVSRPKQKVRKEPCPICNVAYSTSILNDHINTHTNLKPYMCEICGIKFRFLSNLRSHQHDKYLCDVCGKLVMSSKSLRKHILTTHSNVTLSCDKCNKVFKNPISLKYHLKRHKGERPYLCTSCGKAFSQMPHLKTHMNSQHNKETILCVRCNKKLIKGKDHKCREIRGTESLERCKICNRAVVDMETHDSLHKLGHDLMCGFCNKVFLEKDKLKSHVYNRVCCRKFEFSCDKCPKKFRTRGSLTVHVRTHTGERPYSCEECGKRFVQFTHLSYHRKLHTGEKHFECPYCEKRFALKGNLTQHIRMHTGEKPHVCEYCLKGFPTSSSLRKHQRIHVIQCFTKFIHPPTATYSHFILNDSIRYPCVTVCRRPSYKTEELANFGIHSQSLESSFAFKYFNFSKHSLTELLEKATYNYKEMFFQYAYASKGGSDSSNELIKLTSMYRIDRGRCFTIQPLQMSNIFSVSGGYMFFLKHNVTSQSMNEYGISTHGYQFYLHDPNEILTADDDERNNFLEYLDLEASEDMRIKFEIQEYSKAPTKENDCIDDRDYSRSKCEEMCVNQQIAKILNCTVPWMLLPENETFDECNNYKTVKLSIKMYTNQVIRDKLMKNCTCPISCNFTVYKTSVISRRPIEPVLAPNCVICFYCTNLVFKMSEVFGYDSNQLVADIGGSLGFLLGLSVLSLICLLEEVSKLIFRIFFKGKIPNILNKEVQPNNQQIEDKILKEKMNLAPEYANITNFVTKNQNCDDYSNQNIKDNIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -