Ocom053836.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068987.1:26940775-26943321[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00074 0.27 14.1 0.2 3 21 242 260 240 261 0.94 2 13 1 3.7e+02 4.3 2.7 1 23 287 309 287 309 0.90 3 13 0.012 4.4 10.3 0.3 6 23 320 337 320 337 0.99 4 13 0.68 2.5e+02 4.8 4.5 2 23 345 366 344 366 0.97 5 13 0.0056 2 11.4 1.3 1 21 374 394 374 395 0.95 6 13 5.6e-05 0.02 17.7 1.9 2 23 399 420 398 420 0.97 7 13 1.3e-06 0.00047 22.8 0.7 1 23 426 448 426 448 0.98 8 13 0.00073 0.26 14.2 1.3 1 23 481 504 481 504 0.93 9 13 1.4e-05 0.005 19.6 1.3 1 23 529 551 529 551 0.98 10 13 3e-07 0.00011 24.8 0.9 1 23 557 579 557 579 0.99 11 13 1.8e-05 0.0064 19.2 3.7 1 23 585 607 585 607 0.98 12 13 0.00078 0.28 14.1 1.0 1 23 613 635 613 635 0.98 13 13 1.9e-06 0.00068 22.3 2.8 1 22 641 662 641 662 0.95
Sequence Information
- Coding Sequence
- ATGAACATTAACGAACAAAACCCACTTTTTCAGTTCAACACTGAAGTTTGTtgtgtttgtttaaaacaaGATCATTTACAATTTGTTACTGAAAATAAGCTTTTACATGATATATTTACTAGGTTAACGGATACACAGgATGAAAGTGGAAAgacctattttaaaaaattttgcccAGTATGTGTTGATAAACTTGAAATTATATCAAATTTTATACACTCATTGCAGAAACAGTCTAATACACAAGTTATTCAAACAAAGTCCTGCTGTAATGTTTGTTTTAGTTGCGAAACTGTGACTAAATTTCCTCAACATATATTTGACCTCTTCCAAAGAATGACAGACACTCAGcTGATGTTGAAATTTAATGCAAATATTTGTTACAAGTGCCTTAATATGTTAGAGGAAACCTCAACTTTTAtagaaacaattaataataatgaacAATCAATGATACACACAGTGACAATAAAACAAGAATCAAACCAAGCtttaaaaatggaaattaagGAAGAGATTATGCAAGATGAAGATGATGTTTTTATTGAAGTCCCTTATATCAAAACTGAAACTGAAGCATGTTTTAATGATCCTGATTTGGTATTAAAATCAGAAGTTTTTATCCAGGAAggTGATTTTTGTGGAGATAATGAAGGAGGTGCCTTAAAAATGGAAATTGTAGATGATGGATTACTGGATAGTTATAAAGATTTACTTATAGATTGTACAGTTTGTAATAGATCTTTTAGAACAACAGGTGGTTTGCTAAATCATTTAAAACAGAGATTGAGATGCAGGTATCAAACTACATACATTGCTCAATTTTGGAAATCTTTTTATAGAAAAGCTACTAAATCTTTTAAATGCCAAGTGTGCCTTAAATATTTTTCTTCTTTACAGAGAAAGGATAAACATACCAAAGCCCATTTTGGTAAATCTTGTATTCTGTGTATTTGTTGTGGTAAACCATTTATTAAATCCAAAGAATATTTTCAACATTATAGAAATCATTTAACTAaacaatttccaataaaatgtaaaacatgTCTGAGACGATTTCCTACAAAATGTATCTACTTTAAACATCTAAAGATACATAGAAATTTAGACAAGAAACGGTACAGATGTAAAATCTGCTACTCTCCTTTTACTAAAAAAACATTGTTGATTAATCATAAGAACAAAGATAAATTAACTTGTCCATTTTGTGTTAAAATGTTTTGTAAAAACAGTGATTTGGTCAACCACGTACGTTCTCACACTGGAGAAAAACCCTATCAGTGTGATGTTTGTAACTGGAGATTCAGCTTTAAGGGTAACTTGATCAAACATAGTAGAATACATACAGGTGAGTCAAAAATGGTGAAGTTGAGTGTagattttgatttatatttcgGATTGTTATccctaaaaattgattttttcgcAGGTTACAAACCCCACATTTGCATGATATGTTTAAAACAATTCTCAAGACCTGATTATCTAAAAAGTCACTACGTCAAAGTCCACAAAAAATCTACAGATATCGGCGTACGTCGTAGGTACACCAAAAACCAAAACAAGCAAACAATAAAACCACAATTCGTTTGCGCCTTTTGCAACAAAGTCTGCCCGTCAAAGTCATCGCTGTCTTCACATATCAGAGTGCACAACAAAGAAGATACTTTTCAATGCACCGTATGCGATAAGTCCTTCCGCTACAAGGGTTTATTGAACGGCCACATGAAGATCCATTTGAACTACCGTCCCTACGCTTGCACTTCGTGTCCCAAGACTTTTATAAAACGCCACGACCTTACGAGACACACGAAGACGCACACCAGAGAAAAGAacttcaaatgcgaaatttgctTCGATAGATTTTCAAGAAAGGACGTTCTCAGGTTACATCTAAGGGGACATACGGGACAAAGACCGTACGAGTGCGAATATTGTTTCAAGACTTTTGTACAGAAGAGTAACTTGACCCACCATCTTAAGAGATGTAAAATGTTCGAGGAGATCGATATAGTCAACTaa
- Protein Sequence
- MNINEQNPLFQFNTEVCCVCLKQDHLQFVTENKLLHDIFTRLTDTQDESGKTYFKKFCPVCVDKLEIISNFIHSLQKQSNTQVIQTKSCCNVCFSCETVTKFPQHIFDLFQRMTDTQLMLKFNANICYKCLNMLEETSTFIETINNNEQSMIHTVTIKQESNQALKMEIKEEIMQDEDDVFIEVPYIKTETEACFNDPDLVLKSEVFIQEGDFCGDNEGGALKMEIVDDGLLDSYKDLLIDCTVCNRSFRTTGGLLNHLKQRLRCRYQTTYIAQFWKSFYRKATKSFKCQVCLKYFSSLQRKDKHTKAHFGKSCILCICCGKPFIKSKEYFQHYRNHLTKQFPIKCKTCLRRFPTKCIYFKHLKIHRNLDKKRYRCKICYSPFTKKTLLINHKNKDKLTCPFCVKMFCKNSDLVNHVRSHTGEKPYQCDVCNWRFSFKGNLIKHSRIHTGESKMVKLSVDFDLYFGLLSLKIDFFAGYKPHICMICLKQFSRPDYLKSHYVKVHKKSTDIGVRRRYTKNQNKQTIKPQFVCAFCNKVCPSKSSLSSHIRVHNKEDTFQCTVCDKSFRYKGLLNGHMKIHLNYRPYACTSCPKTFIKRHDLTRHTKTHTREKNFKCEICFDRFSRKDVLRLHLRGHTGQRPYECEYCFKTFVQKSNLTHHLKRCKMFEEIDIVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -