Ocom022523.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068980.1:56898973-56906335[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.14 51 7.0 0.3 2 22 43 63 42 64 0.82 2 18 1.7 6e+02 3.6 3.7 1 23 70 92 70 92 0.97 3 18 0.0075 2.7 11.0 0.8 1 23 98 120 98 120 0.94 4 18 0.00016 0.058 16.2 1.6 1 23 126 149 126 149 0.98 5 18 0.00028 0.1 15.5 0.9 1 23 161 184 161 184 0.96 6 18 0.0057 2.1 11.3 0.4 3 23 195 215 193 215 0.96 7 18 1.9e-07 6.9e-05 25.4 1.2 1 23 221 243 221 243 0.98 8 18 8.8e-06 0.0032 20.2 0.5 1 23 249 271 249 271 0.98 9 18 0.017 6.2 9.9 0.1 3 21 280 298 279 299 0.93 10 18 0.012 4.2 10.4 0.1 2 23 337 358 336 358 0.93 11 18 0.16 56 6.8 1.1 2 23 430 451 429 451 0.90 12 18 0.36 1.3e+02 5.7 3.2 1 11 485 495 485 507 0.79 13 18 8.2e-05 0.03 17.1 1.7 1 23 513 536 513 536 0.97 14 18 4.5e-05 0.016 18.0 0.9 1 23 548 571 548 571 0.97 15 18 0.29 1.1e+02 6.0 0.7 3 23 582 602 580 602 0.94 16 18 0.00046 0.17 14.8 0.1 1 23 608 630 608 630 0.97 17 18 1.9e-06 0.00069 22.3 1.8 1 23 636 658 636 658 0.99 18 18 0.0013 0.45 13.4 0.0 1 21 664 684 664 685 0.94
Sequence Information
- Coding Sequence
- ATGAACAAGAACCAAAATCTAAAATCCCCAACGAGAAGACGCAAGGAAACTTTAAAACGGCAAAAAACTAACAGTTCCAGAAAAACATCCCCACATCCTCCCCCTTTGCTCCTAGAAGATCCCTTACAATGCGATTACTGTACAGCCACTTTTAACAACAACGTTGATTTTGCTTTTCATTCTTTGGTCCATAGCACAGATAACAAGTACACATGCCATTTGTGCAACTACAAAAATTCTTACAAGTATAAAATCGGCATACACGTCAGAACCCATGAAGGCACAAACAAATTCAAATGCGAAACTTGCGGCAAGGGATTCATGGGTCAGAAACAAGCCGAAGAACACAAAAATTTCCATACTGGAGAAATGCCTTTTCAGTGTGAAATTTGTGGAAGATACTTCATGTTTTCTTCACGTCTAGCCTCGCATAGGAGGAGCTACCACTACGAAGTGCTAACAGGTAAACCCCTCGTGAAATTTGACTGCGTCGAGTGCAAGAAGCACTACAAGTCGGCAGAAGGTCTGAGAACGCACATCATCAAGATCCACAAAGCCAACGAAATCGACCTGACTGTCATCTGTGAAATATGCGGCAAAAAACTTGCGAATAAAAAGAGGCTAAAATTTCATCTTCGTGTTCACACAGGCTACAAACCGTATGCCTGTCACATATGCCCCAAAAACTTCTCCAAGAAGGATCAGCTGGTCGAACACATCCGGACACATACAGGGGAAAGACCTTATGTTTGTAAGTTGTGCGGCAAAGGTTTTGCTCAAAGAACCCCTTTAAAAACTCACGAGAAGACGCATAATGTCGATAGACCCGGCAACGCATGCGCTCTCTGTAAGTTCGTGTTCAAATCGAAAGTCGAGTTAGAGTACCACGTGAAAATgccaaagaaaagaagaaaacttAAAGATCTATCCGAACGAAAGCTCAAAGTACTCAAATCGAAACGAGAACCGTCCCCTCTTCCTGAATTAGTTAAGCGCGATGAACCCATATATTGCGAACAGTGCGATAAATCGTTCGATTATGACGTAGACTTTGCTGTACATTCTATTAAACATAGTTCAGATAATAAATATAGATGTCACTTATGTTCTAATTATCAAAATATACGAAGAGACCGCATGGAGATACACATTAGACGTCACGACAACCCCAAAAAGCGTGGTCGTCCTGCGACTGGACGGAAACCGAAAATAAGGAAGCGAGACCTTAACGGGAAAGAGTATAAAAAACTACCACTTCCGGATCCGGTGAAACTGGATGAACCGATTAAATGTAAGGAGTGCGACCAGTACTTCCACACGAACCTGGATTTCGCTCTGCACTCTATAGAACACAGCAAAGAATCGAAATATTCTTGTCACTTGTGTCGTTTTACCAATTTACGAAAAGATCGTTTTGAGATCCACGTGCGGTTGCACGAAGGCAGTACCAAATACAAATGCGACATTTGCCAGAAAGCGTTCAGATGTGGCAGTCACGCAGATGAACATCGAAATTTCCATACGGGCGAGAAGCCTTTCCAGTGCGAGATATGCGGTAAGCATTTCATGTACTCCAGAGGCCTCGCCAACCATCGCATCAAGACTCACTCCCAAATATTGACCGGGAAACCCAGGGAGAAGTTCCGGTGCGAGTATTGCGAAAAAGAGTTCGAGTCTTCTACGGGACTCACCAGCCACACCAacataaaacacaaaaacatacaaCCGGATCTCTCTGTCATATGCGAAATTTGCGGCAAAAAAATATCCTGCATGGGTAGGCTGAAGTACCATCTTAGAGTGCATAGCGGTGATAAGCCTTATGCCTGTCTGATGTGCCCAAAGAGGTTTGCTATGAGAGACCTCCTCATCGAACACTCCAGAGTGCATACGGGAGAAAAACCGTATGTTTGCAAATACTGCGGAAAGACATTCGGTCAGAGATCGCCTTACAGATACCATATCAAAACTCACACGGGAGAAAAGAACTACATATGTCCTCTTTGCAACAAGGGATTCATTTCCAATGCCGGTATGAagagtcatgttaaaaattgctTCAAACCTTAA
- Protein Sequence
- MNKNQNLKSPTRRRKETLKRQKTNSSRKTSPHPPPLLLEDPLQCDYCTATFNNNVDFAFHSLVHSTDNKYTCHLCNYKNSYKYKIGIHVRTHEGTNKFKCETCGKGFMGQKQAEEHKNFHTGEMPFQCEICGRYFMFSSRLASHRRSYHYEVLTGKPLVKFDCVECKKHYKSAEGLRTHIIKIHKANEIDLTVICEICGKKLANKKRLKFHLRVHTGYKPYACHICPKNFSKKDQLVEHIRTHTGERPYVCKLCGKGFAQRTPLKTHEKTHNVDRPGNACALCKFVFKSKVELEYHVKMPKKRRKLKDLSERKLKVLKSKREPSPLPELVKRDEPIYCEQCDKSFDYDVDFAVHSIKHSSDNKYRCHLCSNYQNIRRDRMEIHIRRHDNPKKRGRPATGRKPKIRKRDLNGKEYKKLPLPDPVKLDEPIKCKECDQYFHTNLDFALHSIEHSKESKYSCHLCRFTNLRKDRFEIHVRLHEGSTKYKCDICQKAFRCGSHADEHRNFHTGEKPFQCEICGKHFMYSRGLANHRIKTHSQILTGKPREKFRCEYCEKEFESSTGLTSHTNIKHKNIQPDLSVICEICGKKISCMGRLKYHLRVHSGDKPYACLMCPKRFAMRDLLIEHSRVHTGEKPYVCKYCGKTFGQRSPYRYHIKTHTGEKNYICPLCNKGFISNAGMKSHVKNCFKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -