Ocom054338.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- zfy1
- Assembly
- GCA_035357415.1
- Location
- CM068988.1:2661468-2663344[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.029 11 9.1 1.2 1 21 144 164 144 165 0.87 2 13 0.00035 0.13 15.2 1.6 2 23 175 195 174 195 0.97 3 13 4e-05 0.014 18.1 0.8 1 23 201 223 201 223 0.97 4 13 1.5e-05 0.0055 19.4 2.6 1 23 231 253 231 253 0.98 5 13 0.0002 0.072 15.9 3.8 1 23 258 280 258 280 0.98 6 13 2.3e-06 0.00084 22.0 1.4 1 23 286 309 286 309 0.94 7 13 4.6e-05 0.017 17.9 5.4 1 23 315 337 315 337 0.98 8 13 0.0012 0.43 13.5 1.3 1 23 343 365 343 365 0.96 9 13 0.00033 0.12 15.2 0.3 3 23 373 394 372 394 0.96 10 13 9.9e-06 0.0036 20.0 0.9 3 23 416 436 415 436 0.97 11 13 4.4e-06 0.0016 21.1 3.5 1 23 442 464 442 464 0.98 12 13 2.6e-06 0.00093 21.9 2.9 1 23 470 492 470 492 0.99 13 13 0.00015 0.054 16.3 1.9 1 23 498 520 498 520 0.97
Sequence Information
- Coding Sequence
- atgtatgaaattgaaatatttgataaaGATAAAAATCGTTTAATTATATCACCTAACGATATTCAAACCAAATGCAGAGTTTGTCTTAAACAAAATGGAAcgattaatatatttgaaacTAAAGAAAATGAACATTTCTATAGTGATATTTTAGCAGCCTTATCTTTGCTTCAAgTTGATAAGACGGATGGAATGCCACAAAATGTTTGTACTACATGTGGAGATTTAGTTATAACTGTTCATTCATTTAAACAGCAAGTACAAGCATCACATGTAATTTTGCAAATTGCCCTAGGTCAGATAAATCTGAATACAATAGGGCAACCAACATCAAAAGCAGAACTTGAACAAattcaacaattaaaaattgctGACCAATATAGTAATactgttataaataatttggaaaattcAAAGAGCAATGAAAAATTTGAATGTTCTTTCTGTGGTCTTAAATTTGAAACTCGCTCTGAGTATATCTTCCATAGAAAAAGAGAAGAAAGGCAAAGAAGAACAAAACAATCATGTCCTCAATgtacgaaaaaatttttttcttatgaATTAAAGGATCATATGAATTCACATACAAAATGTAAACCTTATGAATGTGATTTATGTGGTATTAAGTTTAGTTACAAAACAAGTTTAACAATACATAATCTAAAACATAAATCAAATGAAGTTCCTAAATTTACATGTGGAGAATGTGGAAAGAAATTCTTTACCAAACATACATTGGGAGTACATCAAAAAGTGCATGGTGGACCTCCATATCCTTGCAAACTCTgtcataaattatttacaaaaagaaATGTGTTGAAGTTACACATGAGAAGTCATTCTGGTGAAAAGCCATATTTGTGTAATGACTGTGGAGCTAGATTTTCTCAACAAGGACATTTAAACACACATATAAAACTAAAGCATAGTAATGAGAAACCATTCTGTTGTAATATGTGCGataaaaaatttgctataaaGAGCCATTTAAGTGTTCATTTAAAAACACATGCTAAGGAAAAGTCTTACTTGTGCACTATTTGTGGTAAACTATTCACACAAGAAACAGCCTGTAAAGCTCATATGTTATCCCACTTGGAAGAACCTGGTATACTGTGTAATACTTGTGGACAAGTATTCCCTAGTAGAGTAAAGCTCTTTGAACATATTAAAGAAAAACATGGTGAGCTTCCCTCCAGTcctgtaaacaaaaaaaattggccCAAAGGCATTAAAACTCGAATGTGTGAATTATGCCAAAAACcatttgataaaaaaagcacCTATGAAATTCACATGCGTACACATACAGGGGAAAAACCTTACTCCTGTAAAGAATGTGGTAAAAACTTTACACAAGGATCTCATTTATATTACCACATGAAACTGCATAATGGGGAAAAAGATTATAGTTGTcaattttgtaacaaaaaatttacattgAAAGGAAATTTAACCCAACATGTTAGGACCCACACTGGAGAGAGACCTTTTGAATGTGAAGtttgcttaaaaaaattttttacattaaataatttaagaagaCACAAAGTTACACATCTACCAAAGTAG
- Protein Sequence
- MYEIEIFDKDKNRLIISPNDIQTKCRVCLKQNGTINIFETKENEHFYSDILAALSLLQVDKTDGMPQNVCTTCGDLVITVHSFKQQVQASHVILQIALGQINLNTIGQPTSKAELEQIQQLKIADQYSNTVINNLENSKSNEKFECSFCGLKFETRSEYIFHRKREERQRRTKQSCPQCTKKFFSYELKDHMNSHTKCKPYECDLCGIKFSYKTSLTIHNLKHKSNEVPKFTCGECGKKFFTKHTLGVHQKVHGGPPYPCKLCHKLFTKRNVLKLHMRSHSGEKPYLCNDCGARFSQQGHLNTHIKLKHSNEKPFCCNMCDKKFAIKSHLSVHLKTHAKEKSYLCTICGKLFTQETACKAHMLSHLEEPGILCNTCGQVFPSRVKLFEHIKEKHGELPSSPVNKKNWPKGIKTRMCELCQKPFDKKSTYEIHMRTHTGEKPYSCKECGKNFTQGSHLYYHMKLHNGEKDYSCQFCNKKFTLKGNLTQHVRTHTGERPFECEVCLKKFFTLNNLRRHKVTHLPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00459178;
- 90% Identity
- -
- 80% Identity
- -