Ocom027905.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068981.1:41326692-41328563[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.5e-05 0.016 18.0 2.4 1 23 124 146 124 146 0.98 2 12 5.4e-06 0.002 20.9 0.5 1 23 159 181 159 181 0.97 3 12 0.00015 0.055 16.3 1.8 1 23 195 217 195 217 0.99 4 12 5.2e-05 0.019 17.8 1.3 1 23 223 245 223 245 0.98 5 12 1.2e-05 0.0044 19.7 3.5 1 23 251 273 251 273 0.98 6 12 0.081 29 7.7 1.1 2 23 295 315 294 315 0.97 7 12 3e-06 0.0011 21.7 5.7 1 23 322 344 322 344 0.98 8 12 2.8e-07 0.0001 24.9 0.7 1 23 350 372 350 372 0.98 9 12 0.00026 0.095 15.6 4.5 1 23 378 400 378 400 0.98 10 12 3.3e-07 0.00012 24.7 2.2 1 23 427 449 427 449 0.98 11 12 2.1e-05 0.0077 19.0 0.4 1 23 455 478 455 478 0.97 12 12 5e-05 0.018 17.8 2.2 1 23 484 507 484 507 0.96
Sequence Information
- Coding Sequence
- ATGgttgataataaaaatgtaacagttGACAATTTTTCATCAATATGTAGATTATGTCTCTCATCCAATGACTTGTTACCGTTTATTTCAAATGATATGATCAGagtgtttaaaaatattacaaatataaaggtTGAAAATGATGACCTACtaccaaaaaatatttgtaaacgtTGCTTGTCATGTTTAGAAGATATATTGCAGTTTATAAAACAGTGTATAGTGAACCATTCACTTTTAAGTGAAgccttaaataaaataaaaactgatACTAAATCACCACAGAAAATTATCGAGAAATCTCAAATAAACGATTTTAATCTTAAGGAAAATGCAAAAGAAGATATTGAAAACAATACATTTACAGAATTCCAATGTGATATTTGTAACATGTCATTTACAGTGAAAAAGCTACTACTACATCATGTAAAACAACATTTGGACCAGAAATATTCTAATAAGATTAAGAGTAAGTTTAAATGTGAATTATGTGGAAAAATATTTGCTACAAATGTTTCCTTATTGAGACACAGTAAACTacacaagaaaagaaaaaaagaatcaCAAGCTAAACAACTTAGTTATAAATGTGATGAATGTGATCGTATCTTAACTTCACAACATGCTTTAGATAGCCATAAAAAAACCCACACTGGGGAAAGACCATTCAAATGCAGTCATTGTGAAAAAGATTTTCCTTACCTTGGTAGCTTAATTATACATACTAGGCTTCACACAgGAGAAACTCCATATATCTGTCCTGTTTGCAATAAAGGTTATTGCAGTTCTACTAGTCTGAAGAAACACACAAAAAAACATGCTATTGAACAAGATATCATTGAAGATAACAAAGATAAAGGGATAACAGATTTGCAAAAAGTTGAATGTCcattttgtaacaaaatactCAATAAACATGGTTATGGAACTCATTTACGGACccacacaaataaaaaaaaaatattttgctgtaatgtctgtaataaaatgTTCCAAAAACAGTCTCACTTAGAAAGGCATATCAGAATCCATACaggaGAACGTCCATTTGTTTGTAAGATCTGCAATAAAGCTTTTGTTCAAAATGGTGATTTAAAACGACATAGTCAAACTCATTATGGACACAGAGAATTCCAGTGCCAATATTGTGGTAAACTATTTTTTACCAAATGTTCTCTTAGTACTCATATTTTAAATCATTGCATTTCCAAAGGTGGTAGACAAGATAATCAAACATTACCAATCAGTAACATTAAATCTGAATTAAATGAAAAACCATTTCAGTGTCAAATTTGTGGAAAATCATTCACTGCCAACAGCAGTCTAAAGGTTCACCATAGATTGCACACTGGGGAAAACCCATTTGTTTGCAACATTTGTAGTAATGCATATAACAACTCCAGTGCGCTTAAGAGACATATCATAAGATTTCACACTGATGAAAAACCTCATGTTTGTATGATTTGTCAAAAAGCATTTCACGACTCGGCAAGTTTAAAAAGACATGTTAAGTCAGTTCATTCtgtattagaaattaaaaatgggACTAGGTCTACTGAAGCTTATAATGAAAGTGTCAATAAACAATAA
- Protein Sequence
- MVDNKNVTVDNFSSICRLCLSSNDLLPFISNDMIRVFKNITNIKVENDDLLPKNICKRCLSCLEDILQFIKQCIVNHSLLSEALNKIKTDTKSPQKIIEKSQINDFNLKENAKEDIENNTFTEFQCDICNMSFTVKKLLLHHVKQHLDQKYSNKIKSKFKCELCGKIFATNVSLLRHSKLHKKRKKESQAKQLSYKCDECDRILTSQHALDSHKKTHTGERPFKCSHCEKDFPYLGSLIIHTRLHTGETPYICPVCNKGYCSSTSLKKHTKKHAIEQDIIEDNKDKGITDLQKVECPFCNKILNKHGYGTHLRTHTNKKKIFCCNVCNKMFQKQSHLERHIRIHTGERPFVCKICNKAFVQNGDLKRHSQTHYGHREFQCQYCGKLFFTKCSLSTHILNHCISKGGRQDNQTLPISNIKSELNEKPFQCQICGKSFTANSSLKVHHRLHTGENPFVCNICSNAYNNSSALKRHIIRFHTDEKPHVCMICQKAFHDSASLKRHVKSVHSVLEIKNGTRSTEAYNESVNKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -