Basic Information

Insect: Ophraella communa
Gene Symbol: -
Assembly: GCA_035357415.1
Location: CM068985.1:29813969-29828070[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.8e-07 6.6e-05 25.5 5.2 1 23 312 334 312 334 0.98

2 12 0.00011 0.042 16.7 6.7 1 23 340 362 340 362 0.98

3 12 3.9e-06 0.0014 21.3 0.8 1 23 368 390 368 390 0.99

4 12 0.056 20 8.2 4.3 1 23 396 418 396 418 0.94

5 12 0.0026 0.96 12.4 1.3 1 23 424 446 424 446 0.98

6 12 4.7e-08 1.7e-05 27.3 3.6 1 23 452 474 452 474 0.98

7 12 5.5e-07 0.0002 24.0 2.3 1 23 479 501 479 501 0.97

8 12 3.5e-06 0.0013 21.4 2.6 1 23 507 529 507 529 0.99

9 12 3.7e-06 0.0013 21.4 0.7 1 23 534 556 534 556 0.98

10 12 2e-07 7.4e-05 25.3 2.1 2 23 563 584 562 584 0.98

11 12 4.5e-08 1.6e-05 27.4 0.7 1 23 590 612 590 612 0.98

12 12 8.5e-07 0.00031 23.4 2.3 1 23 618 640 618 640 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.8e-07	6.6e-05	25.5	5.2	1	23	312	334	312	334	0.98
2	12	0.00011	0.042	16.7	6.7	1	23	340	362	340	362	0.98
3	12	3.9e-06	0.0014	21.3	0.8	1	23	368	390	368	390	0.99
4	12	0.056	20	8.2	4.3	1	23	396	418	396	418	0.94
5	12	0.0026	0.96	12.4	1.3	1	23	424	446	424	446	0.98
6	12	4.7e-08	1.7e-05	27.3	3.6	1	23	452	474	452	474	0.98
7	12	5.5e-07	0.0002	24.0	2.3	1	23	479	501	479	501	0.97
8	12	3.5e-06	0.0013	21.4	2.6	1	23	507	529	507	529	0.99
9	12	3.7e-06	0.0013	21.4	0.7	1	23	534	556	534	556	0.98
10	12	2e-07	7.4e-05	25.3	2.1	2	23	563	584	562	584	0.98
11	12	4.5e-08	1.6e-05	27.4	0.7	1	23	590	612	590	612	0.98
12	12	8.5e-07	0.00031	23.4	2.3	1	23	618	640	618	640	0.98

Sequence Information

Coding Sequence: ATGGATAATATTGTCGTTACGGAATGTTGTCGAACTTGTTTAAGAGTTGATTGTGGATTAACTTCTACCGAGGTTCAAGATTCGGActctattaaattttttgataagcTTGTGGCATGTGTATCTGAAGtgtcCTGGCTGAAAGATAACATGCCTTTAATTTGTTCAACATGCATTGATCGTCTGCGTGTGGCTTATGATTTTCGCATAGTTTGTCTTGAATCTGATCAAACATTAAACAGATATATAACCAAGTTGGAATTAAATCTACAAAACCGTACTTTATCAACAccaacaaaatttgaatttgcaTTAACTTCTTCAACTACCAATCCAGATTTAACTTTGATAAATGATGAACAGCAAAATTCTGAAtatattcatttaaaacattttttagatAATGATGAAGATCTTACAAAACAAGATGATTTGGAAAATAATGTCTGTGTTGTAGAAAGAAGCTCTAGTCCAGAAGAAAGTGAAAcaaaaatagaatttataaatgaaaatgaattagtaaaacaaaattcagtAATTCAGGATTCTGAATCTGATAAACAACCATCTTTATTACAAGAGAATTCATGTCAAACACAGCCTCATTTACAATACCAGTCACAAGACAATAATTCTATTCAGCAAGTGtattttgactatttttttattcaaccaCAGATAGTAGATGTACTTCCAAAAAGACAAATAGATCATCAACCAGTTAATACAGAAATTGAAACTGAACAAAATCATCACAACAATGAACTCCAGACAATTGTTATAGGATCTGTATCAAATGTTCATCAACCTGTTACCAATCCTACCAATTATATAGCTGTTCCACTTagacaaattattaaaagaaccACAGgAATACAAGTGAGACCTCTGACACCAAAACAAGAAGAGGGTGAGGAAAAACAATCCGTAGGATTTTGTTGCAAGGAATGTGGAaaatcttataaaaaaaaatcaaacttaaGAATTCACCTTCGAACTCATACTGGGGAAAAACCTTTTGAATGTAAATATTGCATAAAAAGGTTCTACCATTCTTCACATCTCCAAGAACATATTCGTCGCCATACAGGGGAAAAACCATTCCAATGTGCAGTCTGTAATAAGCGCTTTACGATTAAGGGAGAACTCACCATGCACATGAAATCCCATACTGGTGAAAAACCTTTTGCTTGTACTTGTTGCGATAGACGTTGCTTAACTTCAGCGGATTTAAAGgttCATATGCGCACCCATACAGGTGAGAAACCATACTCGTGTACCATGTGTGCGAAAAAATTCGCTAGcacatacattttaaattctCACCTTAAAACGCACACTGGAGAAAGACCATATTCATGTACAATTTGTGATAAAACTTTTACACAATCTTCGCATCTTAATGTTCACTTGAAAAAACATACAGGAGAGAAATTCAACTGCAAAATATGTGATGCCAAGTTTACTCATTCTTCTCAACTGACAGTCCATATGAGAGAACACACAGGTCGACAAccgtacaagtgtaccgtatgCCAAAAAGTATGCAATTATGCATCAGAGCTACAATCGCATATGATGAAACATAGAGGTGAAAAATTCACTTGTGTTACTTGCGATAAAAAGTTTACTTCGGCAGCGTATCTAGCCGAACATACCCGTACGCATACTGGAGAGAATTTGTCGACGTGTACCATATGTGATCGACAATTCACCAGGTCacaatatttagaaaaacatATGCGAACTCACACAGGAGAAAAACCATATCCTTGTTTCGTTTGTGGAAAAAAATTCACGCAATCATCCAGTCTTAAAGTTCATCTTCGAATACACACTGGAGAAAAACCTTATTCGTGTAATATGTGCGACAAAAAATTCACCACATCGTCTGATTTAAATGTACATaacaaaaaacatcaaaaatgtAGTGACTCTTAA
Protein Sequence: MDNIVVTECCRTCLRVDCGLTSTEVQDSDSIKFFDKLVACVSEVSWLKDNMPLICSTCIDRLRVAYDFRIVCLESDQTLNRYITKLELNLQNRTLSTPTKFEFALTSSTTNPDLTLINDEQQNSEYIHLKHFLDNDEDLTKQDDLENNVCVVERSSSPEESETKIEFINENELVKQNSVIQDSESDKQPSLLQENSCQTQPHLQYQSQDNNSIQQVYFDYFFIQPQIVDVLPKRQIDHQPVNTEIETEQNHHNNELQTIVIGSVSNVHQPVTNPTNYIAVPLRQIIKRTTGIQVRPLTPKQEEGEEKQSVGFCCKECGKSYKKKSNLRIHLRTHTGEKPFECKYCIKRFYHSSHLQEHIRRHTGEKPFQCAVCNKRFTIKGELTMHMKSHTGEKPFACTCCDRRCLTSADLKVHMRTHTGEKPYSCTMCAKKFASTYILNSHLKTHTGERPYSCTICDKTFTQSSHLNVHLKKHTGEKFNCKICDAKFTHSSQLTVHMREHTGRQPYKCTVCQKVCNYASELQSHMMKHRGEKFTCVTCDKKFTSAAYLAEHTRTHTGENLSTCTICDRQFTRSQYLEKHMRTHTGEKPYPCFVCGKKFTQSSSLKVHLRIHTGEKPYSCNMCDKKFTTSSDLNVHNKKHQKCSDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00911291;
90% Identity: -
80% Identity: -