Ocom022510.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068980.1:56797666-56802197[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00054 0.2 14.6 0.2 2 23 86 108 85 108 0.94 2 21 0.0086 3.1 10.8 0.1 1 23 127 149 127 149 0.98 3 21 0.0043 1.6 11.7 2.1 1 23 153 175 153 175 0.96 4 21 0.0037 1.4 11.9 0.9 1 23 181 204 181 204 0.95 5 21 0.00056 0.2 14.5 0.8 1 23 210 232 210 232 0.97 6 21 0.0026 0.94 12.4 0.9 2 23 239 261 238 261 0.90 7 21 0.011 3.9 10.5 0.7 2 21 273 292 272 295 0.89 8 21 4.6e-06 0.0017 21.1 1.7 3 23 308 328 306 328 0.96 9 21 6e-05 0.022 17.6 1.8 1 23 334 356 334 356 0.98 10 21 9.9e-07 0.00036 23.2 1.5 1 23 362 384 362 384 0.99 11 21 0.018 6.4 9.8 1.7 2 23 422 444 421 444 0.94 12 21 0.0036 1.3 12.0 0.1 1 23 464 486 464 486 0.99 13 21 0.012 4.4 10.3 2.2 1 23 490 512 490 512 0.90 14 21 3 1.1e+03 2.8 0.9 1 23 518 541 518 541 0.84 15 21 0.00068 0.25 14.2 0.2 1 23 547 569 547 569 0.95 16 21 0.0061 2.2 11.3 1.0 5 23 579 598 577 598 0.93 17 21 0.011 3.9 10.5 0.7 2 21 610 629 609 632 0.89 18 21 4.6e-06 0.0017 21.1 1.7 3 23 645 665 643 665 0.96 19 21 6e-05 0.022 17.6 1.8 1 23 671 693 671 693 0.98 20 21 9.9e-07 0.00036 23.2 1.5 1 23 699 721 699 721 0.99 21 21 0.0039 1.4 11.9 0.1 1 21 727 747 727 748 0.95
Sequence Information
- Coding Sequence
- atggaattttattttaggaaGAAATCGAGAAGAATTTCCCTCCGTAATATCAAAAGAAACTCTACGAGGATTAAGAAGGAAGAATTAGATTCTGACAAAGACTACGAATATCAGGTTAAAAGCTCGAAAAAAGACAGTGAAGAGGAAGAGGTGTTTCTAGATTGTAGCGATAATGATTACGAACCCACACCGACTAGAAACTATTCCAAACCTGAATTAAGCAAACGGAGATCGCAAAATGTAGAGAAACAGTGGCCTTGCAAAAAGTGCGGTGGAATATTTACCACCAGAAAAGATCTAGCCGCTCACAAGAAGGAATACCACGTCAAAGAAGACCTGGAGGAACATACCTACCAATTCGACAACGGCCAAGAGCTGTTTATATGCAACACGTGTTCGGCAGAGTTCATCGAAGAGGAGGAAGCCCAAAGGCATATTAAAACACATTCCGAACAGTACGAATGCACCATTTGCaacgaaaaatttaaaaagttgtaCGACTTCGGTACACACAACTACACCCACGATCCCGAACAACTGTTCCGGTGCCCTATATGCCCTTACACGACCTTCCGAAGAACAGGATTCTCTGTACACATCAATTTCACtcacttaaaaaaatacaactacGTTTGCGACACTTGCGGCAAGGGTTTTAACGATATGGTGCTGTACAAAGAACACCATAATGAGCATTTGGGGGTCAAACCGTTCGCTTGTATCGTCTGCAACAAAATGTTCACCTACTCCAGATATCTATTGACCCATCAAATCCGCTCGCACAAGGTAGGTATCGTCGGGCAACTGCTACCGAACCAATGTTCGGTGTGCAATAAAGTTTTCGGCAAGACGATTACTTTGGAAAAACATTTCGAAGACAAACACATCAAAAATACTCTGCCTCATTATAAGAAACACCTTTGCGACACCTGCGGCAAGGGATTTGCCCAGAAAAGCAAGCTGAAGATCCATTATAGGGTGCACACTGGGTTTAAACCATACAGTTGTTCGTCCTGTACGAAGAGTTTCACTAAAAAAGACTATTTGGTCATGCACGAAAGAATACACAGTGGAGAAAAACCTTATTCCTGCGAGTATTGTGGCAAATGTTTCAGTCAGGGGGCGCCACTTAGGATACACCAGCGGACGCACACAGGGGAAAGACCCGAAAACTCCAACGCCGAAGACGACAGCGATTTTGgaccagttacgaagaaaagaataaaaaaatctatgTATTCGAACAATCTGCTGAAGCAATGGCCTTGTAAGAAGTGTAACGAAGTTCTAGCGAGTAAAAGAAGTCTATCGATGCACAAAAGGGAATGCCACAGCAAAGAAGAGCAAGAAGAAGAACATACGTACCAATATGACGCTGTACAGGATCTCTACGTTTGCGGGACTTGTTCAGCGGAGTTTACAGCACAGgaagaagtcgaaacgcacatTAAGACACATGCAGAAATGTACACGTGTACGATTTGCAACGAGAAGTTCACCAAGCTGTACGATTTTGGTACGCACAATTACCAGCATGACCCAGAGAATAAATTCCGATGTCCTTTGTGCTCCTACACCACCTTGAAAAGAACCGGTTTCTTGGTGCACGTGAACTACAcccatttgaaaaaattcaactACGTTTGTGAAACTTGCGGTAAAGGTTTCAATGATCTGGTTTTGTATAAAGAACACAACAACGAGCACTTGGGCATCAAACCTTTCGGTTGTATCGTCTGCAACAAAATGTTCACCTACTCTAGATATCTATTGACCCACCAAATCCGCTCGCACAAGGTAGGTATCGTCGGGCAACTGCTGCCGAACCAATGTTCGGTGTGCAATAAAGTTTTCGGCAAGACGATTACTTTGGAAAAACATTTCGAAGACAAACACATCAAAAATACTCTGCCTCATTATAAGAAACACCTTTGCGACACCTGCGGCAAGGGATTTGCGCAGAAAAGCAAACTGAAGATCCATTATAGGGTGCACACTGGGTTTAAACCGTACAGTTGTTCGTCCTGTACGAAGAGTTTCACTAAAAAGGACTATTTGGTCATGCACGAAAGAATACACAGTGGAGAAAAACCTTATTCCTGCGAGTATTGTGGCAAATGTTTCAGTCAGGGGGCGCCACTTAGGATACACCAGCGGACGCACACCGGAGAGAGGCCGTACATTTGTCAGATATGCAGTGCCGGGTTTACATCCAGGGGGGCGCTAAATATGCACACTAAAAATTGCGCGGGGAGTATGTGA
- Protein Sequence
- MEFYFRKKSRRISLRNIKRNSTRIKKEELDSDKDYEYQVKSSKKDSEEEEVFLDCSDNDYEPTPTRNYSKPELSKRRSQNVEKQWPCKKCGGIFTTRKDLAAHKKEYHVKEDLEEHTYQFDNGQELFICNTCSAEFIEEEEAQRHIKTHSEQYECTICNEKFKKLYDFGTHNYTHDPEQLFRCPICPYTTFRRTGFSVHINFTHLKKYNYVCDTCGKGFNDMVLYKEHHNEHLGVKPFACIVCNKMFTYSRYLLTHQIRSHKVGIVGQLLPNQCSVCNKVFGKTITLEKHFEDKHIKNTLPHYKKHLCDTCGKGFAQKSKLKIHYRVHTGFKPYSCSSCTKSFTKKDYLVMHERIHSGEKPYSCEYCGKCFSQGAPLRIHQRTHTGERPENSNAEDDSDFGPVTKKRIKKSMYSNNLLKQWPCKKCNEVLASKRSLSMHKRECHSKEEQEEEHTYQYDAVQDLYVCGTCSAEFTAQEEVETHIKTHAEMYTCTICNEKFTKLYDFGTHNYQHDPENKFRCPLCSYTTLKRTGFLVHVNYTHLKKFNYVCETCGKGFNDLVLYKEHNNEHLGIKPFGCIVCNKMFTYSRYLLTHQIRSHKVGIVGQLLPNQCSVCNKVFGKTITLEKHFEDKHIKNTLPHYKKHLCDTCGKGFAQKSKLKIHYRVHTGFKPYSCSSCTKSFTKKDYLVMHERIHSGEKPYSCEYCGKCFSQGAPLRIHQRTHTGERPYICQICSAGFTSRGALNMHTKNCAGSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -