Basic Information

Insect: Ophraella communa
Gene Symbol: SCRT1_2
Assembly: GCA_035357415.1
Location: CM068980.1:56843970-56865084[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 43 0.71 2.6e+02 4.7 0.1 2 23 68 89 67 89 0.91

2 43 0.023 8.2 9.5 3.5 1 23 95 117 95 117 0.98

3 43 0.005 1.8 11.5 4.2 1 23 120 142 120 142 0.96

4 43 0.00033 0.12 15.3 0.3 2 23 149 170 148 170 0.96

5 43 0.00019 0.068 16.0 1.6 1 23 179 202 179 202 0.93

6 43 5e-05 0.018 17.8 0.3 2 23 212 233 211 233 0.96

7 43 0.0029 1.1 12.3 2.3 1 23 239 261 239 261 0.97

8 43 0.044 16 8.6 0.6 1 13 267 279 267 283 0.88

9 43 0.003 1.1 12.2 0.6 1 23 305 327 305 328 0.96

10 43 0.0013 0.46 13.4 0.1 2 22 366 386 365 388 0.89

11 43 0.092 33 7.5 1.8 1 23 397 420 397 420 0.96

12 43 0.02 7.4 9.6 1.8 3 20 427 444 426 447 0.93

13 43 0.015 5.4 10.0 0.4 1 15 453 467 453 470 0.91

14 43 0.005 1.8 11.5 3.7 1 23 542 564 542 564 0.98

15 43 0.023 8.3 9.5 1.9 1 23 567 589 567 589 0.97

16 43 8.6e-05 0.031 17.1 0.3 2 23 625 647 625 647 0.96

17 43 0.018 6.5 9.8 0.7 2 23 657 678 656 678 0.97

18 43 0.00019 0.069 16.0 0.1 1 23 684 706 684 706 0.98

19 43 2 7.3e+02 3.3 0.7 3 12 714 723 712 725 0.90

20 43 5.9 2.1e+03 1.9 0.5 2 10 796 804 795 817 0.79

21 43 0.64 2.3e+02 4.9 5.0 1 23 823 845 823 845 0.98

22 43 5.6 2e+03 1.9 4.1 1 23 848 870 848 870 0.91

23 43 0.88 3.2e+02 4.5 3.5 2 23 877 898 876 898 0.94

24 43 8.6e-05 0.031 17.1 0.4 2 23 908 930 907 930 0.92

25 43 0.81 2.9e+02 4.6 0.6 2 23 940 961 939 961 0.96

26 43 0.0052 1.9 11.5 0.3 3 23 969 989 967 989 0.98

27 43 0.047 17 8.5 0.9 1 14 995 1008 995 1012 0.88

28 43 0.11 41 7.3 0.8 3 23 1151 1171 1150 1171 0.93

29 43 5 1.8e+03 2.1 5.2 1 23 1177 1199 1177 1199 0.98

30 43 0.094 34 7.5 4.0 2 23 1203 1224 1202 1224 0.96

31 43 0.33 1.2e+02 5.8 0.2 2 23 1231 1252 1230 1252 0.89

32 43 0.00037 0.14 15.1 2.9 1 23 1261 1284 1261 1284 0.95

33 43 0.15 55 6.9 0.7 3 23 1295 1315 1293 1315 0.97

34 43 2.3e-05 0.0084 18.9 0.2 1 23 1321 1343 1321 1343 0.98

35 43 0.00095 0.35 13.8 1.4 1 23 1349 1371 1349 1371 0.98

36 43 5.2e-05 0.019 17.8 0.1 1 21 1377 1397 1377 1398 0.95

37 43 0.15 56 6.8 1.3 2 23 1435 1456 1434 1456 0.91

38 43 0.098 35 7.5 1.5 1 23 1462 1484 1462 1484 0.96

39 43 0.025 9.1 9.3 1.2 1 23 1490 1512 1490 1512 0.94

40 43 0.0003 0.11 15.4 4.4 1 23 1518 1541 1518 1541 0.97

41 43 0.0038 1.4 11.9 0.7 2 23 1554 1576 1553 1576 0.95

42 43 0.0042 1.5 11.8 1.5 2 23 1586 1607 1585 1607 0.97

43 43 9.5e-06 0.0034 20.1 0.5 2 23 1613 1634 1612 1634 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	43	0.71	2.6e+02	4.7	0.1	2	23	68	89	67	89	0.91
2	43	0.023	8.2	9.5	3.5	1	23	95	117	95	117	0.98
3	43	0.005	1.8	11.5	4.2	1	23	120	142	120	142	0.96
4	43	0.00033	0.12	15.3	0.3	2	23	149	170	148	170	0.96
5	43	0.00019	0.068	16.0	1.6	1	23	179	202	179	202	0.93
6	43	5e-05	0.018	17.8	0.3	2	23	212	233	211	233	0.96
7	43	0.0029	1.1	12.3	2.3	1	23	239	261	239	261	0.97
8	43	0.044	16	8.6	0.6	1	13	267	279	267	283	0.88
9	43	0.003	1.1	12.2	0.6	1	23	305	327	305	328	0.96
10	43	0.0013	0.46	13.4	0.1	2	22	366	386	365	388	0.89
11	43	0.092	33	7.5	1.8	1	23	397	420	397	420	0.96
12	43	0.02	7.4	9.6	1.8	3	20	427	444	426	447	0.93
13	43	0.015	5.4	10.0	0.4	1	15	453	467	453	470	0.91
14	43	0.005	1.8	11.5	3.7	1	23	542	564	542	564	0.98
15	43	0.023	8.3	9.5	1.9	1	23	567	589	567	589	0.97
16	43	8.6e-05	0.031	17.1	0.3	2	23	625	647	625	647	0.96
17	43	0.018	6.5	9.8	0.7	2	23	657	678	656	678	0.97
18	43	0.00019	0.069	16.0	0.1	1	23	684	706	684	706	0.98
19	43	2	7.3e+02	3.3	0.7	3	12	714	723	712	725	0.90
20	43	5.9	2.1e+03	1.9	0.5	2	10	796	804	795	817	0.79
21	43	0.64	2.3e+02	4.9	5.0	1	23	823	845	823	845	0.98
22	43	5.6	2e+03	1.9	4.1	1	23	848	870	848	870	0.91
23	43	0.88	3.2e+02	4.5	3.5	2	23	877	898	876	898	0.94
24	43	8.6e-05	0.031	17.1	0.4	2	23	908	930	907	930	0.92
25	43	0.81	2.9e+02	4.6	0.6	2	23	940	961	939	961	0.96
26	43	0.0052	1.9	11.5	0.3	3	23	969	989	967	989	0.98
27	43	0.047	17	8.5	0.9	1	14	995	1008	995	1012	0.88
28	43	0.11	41	7.3	0.8	3	23	1151	1171	1150	1171	0.93
29	43	5	1.8e+03	2.1	5.2	1	23	1177	1199	1177	1199	0.98
30	43	0.094	34	7.5	4.0	2	23	1203	1224	1202	1224	0.96
31	43	0.33	1.2e+02	5.8	0.2	2	23	1231	1252	1230	1252	0.89
32	43	0.00037	0.14	15.1	2.9	1	23	1261	1284	1261	1284	0.95
33	43	0.15	55	6.9	0.7	3	23	1295	1315	1293	1315	0.97
34	43	2.3e-05	0.0084	18.9	0.2	1	23	1321	1343	1321	1343	0.98
35	43	0.00095	0.35	13.8	1.4	1	23	1349	1371	1349	1371	0.98
36	43	5.2e-05	0.019	17.8	0.1	1	21	1377	1397	1377	1398	0.95
37	43	0.15	56	6.8	1.3	2	23	1435	1456	1434	1456	0.91
38	43	0.098	35	7.5	1.5	1	23	1462	1484	1462	1484	0.96
39	43	0.025	9.1	9.3	1.2	1	23	1490	1512	1490	1512	0.94
40	43	0.0003	0.11	15.4	4.4	1	23	1518	1541	1518	1541	0.97
41	43	0.0038	1.4	11.9	0.7	2	23	1554	1576	1553	1576	0.95
42	43	0.0042	1.5	11.8	1.5	2	23	1586	1607	1585	1607	0.97
43	43	9.5e-06	0.0034	20.1	0.5	2	23	1613	1634	1612	1634	0.94

Sequence Information

Coding Sequence: atggaaaaaattaaaactgaatTCGACACGGACAAAGACGAGAGTTTCACGGAAGAAGAAAAACCGAAAATAAAACAGGAAAAGGTCCGTAAAAAACGCGAAAAGAAACCGAAAAAACCGTCGCTAAGAGAAATACAAAGACTTTTACAGAAGGACAGCAACCCTAACATCATAAACCTAGACGAACTGCCAAATCCTTTAGTGTGTCCAGTTTGCGAGGAATCTTTTCTAACCAATAGAGAATACGCTTATCATTCAGCGAAACACAATAACGATCACCAGTACACATGTCACTTTTGCGATTTCAAAACCGACCAGAAGAAGGAAATCAAGGCTCACATGCTGCAACACAGCGTGTTTAAGTGCAAGATTTgtgataaaatattcaaaaagagACATTCGGCGTACAAGCACGGCGAAAGGCATATGGAAAACAACAAAGTACAATGCGAAATATGCGGCAAAAGCTTACAAAGCCAGTCGTTGAAAACGCACATGAAAATTGTACACACCGATGAAATGAACAACCAAAAGCATTACTGTCCAATATGCAAAAAAGCCTACAGgtaCTCATCCAGCGTTAGAAAACACATTTCAGCGAACCATAGAGAGCTCGGTATAGACGTTTCAGTGGTGTGTGACATATGCGGCAAGAGAATATCTAGTAAGAGTAAGTTGATGAAGCACTTGAGCATCCATACGGGAGACAAACCACATACCTGTGCGGTGTGCCATAAAAAGTTTAGAGCTATCGATACTCTGCGGTCCCACATGGTGGTGCATACAGGAGAAAAACCTTATAAGTGTTCTTATTGCGGTAAAGGTTTTGGACAAAACGCTCCTTATCGATCTAGTGATGATGTTtctgaaacaaaaaatgtaactaTCCCAAATCCAAAAGTGGTTGTAGAATTTCAATGCGAAAACTGCGCATTGATTTTCAGTACTCAAGCAGGCTTCATGCAACACCTGGCGTCTCATCATAACTCTGAAGAGCGACCTCCGGATAACTGTACTTTTTGCGATCAGCCTCTTGCTAAGAAGGAGAACCGCAATCACAGGGTGTTTTTTCACAATGCTGAAAAGAACAGAATTCAATGTTCCGTATGCGACAAGTCTTACTCGCGTCCTATGCTGATTCGAAGACATTACGGCGAGGCGCACAAAGAGTTTGGCATAACGAAGACGTTTATTTGCGAAGTTTGCGGCTACGCCGCATATCATAAGGAAGCCCTTGACAATCATAAAAAAAGCTGTCACGAGAAGAAAATGATTTTGTGCTCGTCTTGCCCGAAGAAATTTAGAACCAGGATGCAGCTGCACTACCACATGCCCGTGCACACTGGAGCTACCCCGTACAAGTGCAAAACTTGCGGAAAGGAGTACAAGCATAGATCAGGTTGGTGGATTATACATTCATTACCGCAGAAGAAAAAAATGCGAAAATACAAGCAAAAATCCGATGTACTGAAAACGAAAAGACCGAAAAAAGAGTACAATTTAGATCAAATAATCAATTTGAACGAAATCACCAAGCCGCTGATATGCCAAAAGTGTTCCAAGGCCTTTTTGACCCACATAGAATACGGTTACCATTCCATAATTCACAACGAGAAAAAAGTGTTCTCTTGTCACCTTTGCGAATATTCCATCGTCAATAAGAAAACCTTTAAGAAACATATCATGTCTCACGACATATTTAAATGCACAAAGTGTGATAAGAttttgaaaactaaattttcCGCTGACAAACACGCTCAATCTCATCAAACTTCCTCTAAAGTACAATGCGAGCTCTGCGGCAAACATCTTAAGAAACAATGTTTGTATCTGCACAAAAGATCCCTGCATTCTGACAATAAAACGTTAGCCAAGTGTCCGATTTGCGGTAAGGAGTACCAAAATTCCGGCAGTTTGCGCCAGCATTATTCCGTTTTTCACAAGGAAATAGGTATTGACATGTCCGTAGTGTGCGACATCTGTGGGCTGCGGTTAAGCTGTAAAGCATCTCTGTCTCAACACTTAAGAACCCACACTGGAGATAAACCTTTTGTGTGTTCGTTGTGTCCTAGGAGGTTCATCTCTAAGGATATTTTAGTGGCTCATATGAGGGTTCATACTGGAGAAAAACCGTACGGGTGTAAATTTTGCGGTAAGAGATTCGCGCACGGAGCACCTTACAGATCTAAAATCGTTCGGAAGAAGCAGAAAAAAGTCCAGAACAACTGCGAAACTACCGATGGCAATTGGGATACGATCATCAAAGACGACCCGGATTTCTTTGTCGAAGATCCCAAGGTCAGCGTTAAAAAACGAGGAAGGCGGAAGTCGCCGGAACTGATGctggataaatttataaatttaaacgaAGTAACCAAACCTCTCATTTGTACGCATTGTTCGAAAGCGTTCCTGACCCATATCGAGTTCGGTCTGCATTCCACGGCACACAACGAAGACGGTTTCTACTCGTGCCACATGTGCGACTATCGCAAAGACAATAAGAAAACCTTCAAGGTGCACGTCAAAAGCCACGATCTCTACAAGTGCGAGAAGTGCAACAGGATTTTAAAGAGTCGACTCTGCGCTTACAAACACTCCCAATCGCACGCCGTGCAAAACCCCGTACAGTGCGAAATTTGcggtaaacatttaaaaaaacagtgtCTCTCAATTCACAAGAGAATATTGCACAGCAGCGAGCGAGCTAACTTCATTACAAAATGTCCCATTTGCGACAAGGAGTACCAGAACCCCAGTAGCTTGAGACAGCACTATTCCGCTTTCCACAAAGAACTCGGCATTGACGTTTCTGTGGTCTGTGACATCTGCGGGATGAGATTATCTTGCAAGGGAAAACTTCCTCAGCATCTTCGCACCCACACGGGCGATAAACCGTTTGGCTGCCACCTTTGTCCTAAAAAATTCATTGCTAAAGATATTCTTGCGGCGCATATGAGAGtgcacaccggcgaaaaaccgtACGAATGTAAATTTTGCGGCAAAAAGTTCGCACACAGCGCTCCCTACAGatcAAAGGATAAGCCACAAAGACTGAAAATAACaaagaaacaaattaaaaaagaaaagagCGACACAGATACAGTCTCAGACAACGATTGGTCCCCGATGGAAACGCCTAAGAAGAAGAGGATTTACAGGAAAAAATCCGTAGACTCACCTACGGAACTGGAAAAGAAGAAACCCGTAAAAAAGAGGAAGAGGAATAAcgaaacaaaagaatttactaGTTCAacggaaatatttttaaaatccgaAGAACGAGATGCGGAAAAATCAGACTTCAGCAAACTAGATTCCGATGACGAAGACGAAGATGGCAAAGAAGAGAAACCGGCAAAGAAAAAACGGAGAGGTAGAAACATAAAGTTGGATTCGATAAAAATCGAAAAATTCGTTAACCTGAACGAAGTGCCGGAACCGGTGGACTGTAAACAATGCGGAGAAACATTCCAAACGCACATCGATCTAGGAATGCACTCCATCAGCCATTCGGACAACAACACTTACTCCTGTCACATGTGCAGCTTCACGAAAGACAAAAAATCCGTCTTCAAGAACCACATCCGCAACCACGATCTTTGGAAATGCGAAAAGTGCGGCAAGATATTCAAGATAAAAAGATGCGCTTACAAGCATTCGAAGACCCACAACGCCAAGAGCTTCGTGCAATGCGAGATATGCGGTAAGGACGTTCGCAACGTGTACTTGGATACTCACAAAAAATTAGTGCACGCAGACGAGAAAAACATACAGATCTACAAATGCCACCTTTGCGACAAGGCGTATAAAAACTCCACCGCCCTCAAAGGGCACTATTCGTACAACCACAAGGAGTACGGCGTAGACACTTCCGTTATATGTGATATTTGCGGTATGAGACTGTCTTGCAAAGGCAAGCTTGGTCAACATTTAAGGACTCACACAGGAGACAGACCTTTCCCGTGCACAATTTGCCCTAGGAAGTTTATTTCGAAAGACATCTTAAGGGCTCACATGCGGGTGcacactggcgaaaaaccgTACGTTTGTATGTACTGCGGTAAGAAGTTCGCTCACGGCGCTCCCTATCGGTACCACATCAAAACCCACACGGGAGAAAGATCTTTCATCTGCAGTGTTTGCGGCAAGGGTTTCATTTCGAGGGCCAACATGCGAATCCACATGAAGAGTTGCATGTTCCCGGTGAAACTCTTCAACGAgaaTATAGACATTCAAACGTATAACTTATTGAATCCCAAAAGACCTGCACTACAAACAGTTGACCTAAATCAATCTGTGGAATGCACTCAATGCAGTAAACATTTTCCTAACCACTTGGATCTTGCTATGCACTCCATTGAACacaacaaaaagaaacaatatGCCTGTCATTTGTGCGATTTCAAAGTCGACACGTTATTCAGCCTTGAATATCATATCAATTTCCATGACGCTGCTAACTTGTACAAATGCGAAATTTGCGAGAAGCCTTTCAAGATTCGTCAGCATGCTTTGGAACACGTGAATTTCCACACCGGGGAAAAACCTTTTTCATGCAATATCTGCAGTAAAAGTTTTCGGTACAGTCGATTCTTACATTCTCATATACGTTTGTCCCATTACTCAACCCGAACGGGCAAAGATTTAATTAGATTAGAGTGCGAAATGTGCAAACAagtttataaaacaatttttggcTTTACTCGGCATATGGAGAAAATGCACCAAGATCCCTTGATCGATAGATCTATCACGTGTAACGTTTGCGATatcaaaatgaaaaacaaatatcaattaaaattgcATAAGAGATCTCACAACATTAAACCATTATCATGTTCAGAATGCGGTAGAAAGTTCAAGAAAAATGATTCTCTCCAAGCTCACATGGGATTACATCTAAATGATGAGGGCATTCCAAAGACTGCTACATAG
Protein Sequence: MEKIKTEFDTDKDESFTEEEKPKIKQEKVRKKREKKPKKPSLREIQRLLQKDSNPNIINLDELPNPLVCPVCEESFLTNREYAYHSAKHNNDHQYTCHFCDFKTDQKKEIKAHMLQHSVFKCKICDKIFKKRHSAYKHGERHMENNKVQCEICGKSLQSQSLKTHMKIVHTDEMNNQKHYCPICKKAYRYSSSVRKHISANHRELGIDVSVVCDICGKRISSKSKLMKHLSIHTGDKPHTCAVCHKKFRAIDTLRSHMVVHTGEKPYKCSYCGKGFGQNAPYRSSDDVSETKNVTIPNPKVVVEFQCENCALIFSTQAGFMQHLASHHNSEERPPDNCTFCDQPLAKKENRNHRVFFHNAEKNRIQCSVCDKSYSRPMLIRRHYGEAHKEFGITKTFICEVCGYAAYHKEALDNHKKSCHEKKMILCSSCPKKFRTRMQLHYHMPVHTGATPYKCKTCGKEYKHRSGWWIIHSLPQKKKMRKYKQKSDVLKTKRPKKEYNLDQIINLNEITKPLICQKCSKAFLTHIEYGYHSIIHNEKKVFSCHLCEYSIVNKKTFKKHIMSHDIFKCTKCDKILKTKFSADKHAQSHQTSSKVQCELCGKHLKKQCLYLHKRSLHSDNKTLAKCPICGKEYQNSGSLRQHYSVFHKEIGIDMSVVCDICGLRLSCKASLSQHLRTHTGDKPFVCSLCPRRFISKDILVAHMRVHTGEKPYGCKFCGKRFAHGAPYRSKIVRKKQKKVQNNCETTDGNWDTIIKDDPDFFVEDPKVSVKKRGRRKSPELMLDKFINLNEVTKPLICTHCSKAFLTHIEFGLHSTAHNEDGFYSCHMCDYRKDNKKTFKVHVKSHDLYKCEKCNRILKSRLCAYKHSQSHAVQNPVQCEICGKHLKKQCLSIHKRILHSSERANFITKCPICDKEYQNPSSLRQHYSAFHKELGIDVSVVCDICGMRLSCKGKLPQHLRTHTGDKPFGCHLCPKKFIAKDILAAHMRVHTGEKPYECKFCGKKFAHSAPYRSKDKPQRLKITKKQIKKEKSDTDTVSDNDWSPMETPKKKRIYRKKSVDSPTELEKKKPVKKRKRNNETKEFTSSTEIFLKSEERDAEKSDFSKLDSDDEDEDGKEEKPAKKKRRGRNIKLDSIKIEKFVNLNEVPEPVDCKQCGETFQTHIDLGMHSISHSDNNTYSCHMCSFTKDKKSVFKNHIRNHDLWKCEKCGKIFKIKRCAYKHSKTHNAKSFVQCEICGKDVRNVYLDTHKKLVHADEKNIQIYKCHLCDKAYKNSTALKGHYSYNHKEYGVDTSVICDICGMRLSCKGKLGQHLRTHTGDRPFPCTICPRKFISKDILRAHMRVHTGEKPYVCMYCGKKFAHGAPYRYHIKTHTGERSFICSVCGKGFISRANMRIHMKSCMFPVKLFNENIDIQTYNLLNPKRPALQTVDLNQSVECTQCSKHFPNHLDLAMHSIEHNKKKQYACHLCDFKVDTLFSLEYHINFHDAANLYKCEICEKPFKIRQHALEHVNFHTGEKPFSCNICSKSFRYSRFLHSHIRLSHYSTRTGKDLIRLECEMCKQVYKTIFGFTRHMEKMHQDPLIDRSITCNVCDIKMKNKYQLKLHKRSHNIKPLSCSECGRKFKKNDSLQAHMGLHLNDEGIPKTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -