Ocom043802.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068985.1:42476008-42476622[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-07 8.2e-05 24.6 0.0 4 41 18 55 17 57 0.91
Sequence Information
- Coding Sequence
- ATGCCGAAAGTACGGGCCAGGACAACTGAGAAGGCTTCCTGGTCTTTTAGCAACCTGGAAAATGCTTTACAGCTTATTAAAAGTGGTTCTTCTATAAGAAATGCAGCCAAAACAATGGGGATTCCATTTTCAAGCCTACAAAAGAGGGTAAAAAAAGGTTCTACTTCAGGCCCACATCTAGGACGATACACAGTATTTAGACCTGATGCAGAAGCCGAGCTGGCCAACTTGGTGAAGAAAATGGCAAATATTTTCTATGGTTGCACCGCTAATCAGATAAGAAGAGTGGCTTTTGAATATGCAGAAAAATGTAACCTAAAGCACAATTTTAACAAAGCTTCAAAGATGGCTGGGCGGGATTGGTTGCATGCTTTTATGGCTAGGAATAACATTTTTGTTAGAAAACCGGAGGCAACCAGTATAAATAGGATCACAGCCTTTAATAAAACAGAGGTCAGTCTGTTCTATGATCTACTTGGCCAGCTGATGGAGAAGCACAAATTTGttcaaaaaaacatttataattgtGATGAAACAGGAATATCAACCGTACAGACTCCCGGAAAAATTCTGGCCACCAAAGGACAGAAGAGAGTGGGATCCATTACCAGCTGA
- Protein Sequence
- MPKVRARTTEKASWSFSNLENALQLIKSGSSIRNAAKTMGIPFSSLQKRVKKGSTSGPHLGRYTVFRPDAEAELANLVKKMANIFYGCTANQIRRVAFEYAEKCNLKHNFNKASKMAGRDWLHAFMARNNIFVRKPEATSINRITAFNKTEVSLFYDLLGQLMEKHKFVQKNIYNCDETGISTVQTPGKILATKGQKRVGSITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00777950;
- 90% Identity
- iTF_00822948;
- 80% Identity
- -