Ocom077751.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- Pkc98E_1
- Assembly
- GCA_035357415.1
- Location
- CM068993.1:23754496-23770553[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.2e-07 0.00014 23.9 0.1 1 37 197 232 197 238 0.89
Sequence Information
- Coding Sequence
- ATGTTCACGGGGACTATTCGTGTAAAAGTATGCGAGGCCCAGAGCCTGAGACCGACGGATTGCTCGATGCGTTATACTTTCGGGAAACCCTATGAACAACTTCTAGACCCTTATGTTACAATTGCTGTAGATGACATTCATGTGGCTCAATCCACTTCTAAACAGAAAACTTGTGATCCAGTTTGgaatgaatattttgaacacCAGGTTGAAAACGCTAAGACGCTGACCCTGACGGTGTTCCATGACGCTGCGATTCCTCCTGACGTCTTCGTCGCAAACGTCTCAATTCTTTTTGAGGATTTGCTAAATAGGGAGAGAGATGATTTTTGGGTTGATTTAGAACCCAAAGGTAGACTGCATGTTAAAATAGATCTAAGGACATCTAAAGAATATGGAGGTAAACCAAGGGAATTTAAAGAGCGTCAAGGTTTTAACAGGAGGCGTGGTGCAATGCGAAGAAGGGTTCATCAAGTTAATGGTCATAAATTTATGGCTACTTTTTTGCGACAGCCCACATTCTGTTCTCATTGTCGGGATTTTATTTGTATGGCGAGGACTAAGAAGCCTAGAAAAATTGGTAAATGTACAAAAGAACAAATTAAAGAGGCTCTTGAACTTATCAGAAATGGACACTCCATTAGAAATGCGGCTAAAATGAAATCAATACCTTATGCTACTTTAAGACGATATTATACCAAAACAAGAAATTTGGAGGTTATTGAAAATGTTAGATTTGTCCCTAACTATACTGTaaaccaaatatttaatgatGAACAGGAAGAAACactcattaaatatttaaaagactgTGCCTACCACTTTTATGGTTTGACTAATGTGGATTGTCGGAAATTAGCTTACGAGACAGCATCAATTAATAAGCTAAAATTTCCAAATTCTTGGGAACGAGAAAAACTTGCTGGAGTTGAATGGTTAAGATCTTTTCGACTGAGACATCCAGAGTTGACTTTAAGAGCTCCAGAACCTTGTAGTTTAGCAAGAGCTACAGGTTTTAATCATACGAACATTGAAAAATACTTTCAAAAccttgaaaatgttttaaaacgtCATCCAAGTTTTGCAGATGGCACTCGAGTGTTCAACTTGGATGAAACGGCGACGACTACTGTACAAAAACCCCAAAAAGTTCTTGCACCTAAAGGTATAAGATGTATTTCCAAGGAAGAATTTTAA
- Protein Sequence
- MFTGTIRVKVCEAQSLRPTDCSMRYTFGKPYEQLLDPYVTIAVDDIHVAQSTSKQKTCDPVWNEYFEHQVENAKTLTLTVFHDAAIPPDVFVANVSILFEDLLNRERDDFWVDLEPKGRLHVKIDLRTSKEYGGKPREFKERQGFNRRRGAMRRRVHQVNGHKFMATFLRQPTFCSHCRDFICMARTKKPRKIGKCTKEQIKEALELIRNGHSIRNAAKMKSIPYATLRRYYTKTRNLEVIENVRFVPNYTVNQIFNDEQEETLIKYLKDCAYHFYGLTNVDCRKLAYETASINKLKFPNSWEREKLAGVEWLRSFRLRHPELTLRAPEPCSLARATGFNHTNIEKYFQNLENVLKRHPSFADGTRVFNLDETATTTVQKPQKVLAPKGIRCISKEEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -