Ocom087900.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068995.1:41758086-41759704[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-08 7.4e-06 28.0 0.0 2 36 16 50 15 56 0.93
Sequence Information
- Coding Sequence
- ATGGTTGGTAACTATGTCAGAAAAACTGACAGGCAAAAATGGGACGAGAATGCAATGGAAAATGCTATACGAGCCGTTGAAAGTCGGCAAATGGGTTGGCTGAAAGCGTCAAAAACTTTTGGTGTCCCTTTTACTACTCTCAGAAGAAGAGCTACAGATGCCAATAAAACGATTAAACATAGTGCAAAAGGTCTTGGTAGAATCTATACAACATTTACGAAGGAGCAAGAACGCATGTTAGTTGAACATATTAAGCTATTGGAGCAACGACTATTTGGGCTCACCTGTGACGACTTACGACGACTAGTTTATGATTGGGCAGAAGCAAATAAAATAGACCACAGATTTAATAGAACCACAAAACGAGCTGGATGGGACTGGGTTAGAGGTTTTAGGAAACGGAATTTAGATCTAACATTACGAAAGCCTGAAAATACCTCTATAGCTCGGGCAATGGCCTTTAATAAACCAGTAATAGCTAACTTTTTTAAAGTATATGAAGAAGtcattaataaatacaaaattatgcCGGAGAGAATTTATAATGCCGACGAGACGGGAATCTCAACGGTACAAAATCCACCAAAAATATTTGCAAGCAAAGGAAAAAAACAAGTGGGTACAATTGCTGGTGCTGAAAGAGGAATACACGTAACAGTAGTTTGCTGCACAAATCCCATAGGCAATTACATCCCCCCGGCTTTTATTTTTCCGCGGAAGAACTGGAAAGAAAGACTACTTGAAGGAGCTCCTACAGGTTCCCTTGGTCTTCCTCAGGAATCGGGTTGGATGACAGGCGATATTTTCGTCAAGTGGATgcagcattttaaaaaattcagtcaTGCGACTAAAGAGTCACCTGTCATACTTGTCTTACATGGACACCATCGTATCCAGCCGCTTGACGTATCCTTCTTTGCACCTCTAAAATCATATTTAAACCAAGAAGTTACGAAGAAAATTAGATCAAACGACGGGAAACCAATTTCCCAACTTCAAGTGGCACGAGTTTTTCGTACAGCCTATGAAAGAGCAGCGACCATTGAGAATGCTGCAAGTGGTTTTAAAAACTCAGGGCTTTGGCCAATAAATCCAGATGTTTTTCCTGAGCACTTGTTTGCGCCTTCTATTACAACAGATCGGCTTGATACACTGAGTGATACCCAGTCAACTACAGCAGAACTTGATACTACGAATGAACTATATAAGGAGAAGGAAGCGCCTAACAATGAAAATGGTACTAGAAATGAGGAAGGCTTTGTTTCACTGGCTTTTTTAAGTCCCATGCCATCAACATCTAAAGCCTTGACCACAAAACGGAAGAAAACTCCTATAGTGCTAACCAGCAGCCCCTTTAttgaagaaatgaaagaaaaggAAGTGGAAAAAACGGAGAAAGTAAGAAGACAAACAGCGCGACAGGCGAAGAAACGTTTACAAATAGATCCTGACGATGCATTTGAAGAGGAATTAAAATTTCCTGGTGAAAGATTAGACAAGGAAGACAAATCTGATgcgttttgtttattttgtggatAA
- Protein Sequence
- MVGNYVRKTDRQKWDENAMENAIRAVESRQMGWLKASKTFGVPFTTLRRRATDANKTIKHSAKGLGRIYTTFTKEQERMLVEHIKLLEQRLFGLTCDDLRRLVYDWAEANKIDHRFNRTTKRAGWDWVRGFRKRNLDLTLRKPENTSIARAMAFNKPVIANFFKVYEEVINKYKIMPERIYNADETGISTVQNPPKIFASKGKKQVGTIAGAERGIHVTVVCCTNPIGNYIPPAFIFPRKNWKERLLEGAPTGSLGLPQESGWMTGDIFVKWMQHFKKFSHATKESPVILVLHGHHRIQPLDVSFFAPLKSYLNQEVTKKIRSNDGKPISQLQVARVFRTAYERAATIENAASGFKNSGLWPINPDVFPEHLFAPSITTDRLDTLSDTQSTTAELDTTNELYKEKEAPNNENGTRNEEGFVSLAFLSPMPSTSKALTTKRKKTPIVLTSSPFIEEMKEKEVEKTEKVRRQTARQAKKRLQIDPDDAFEEELKFPGERLDKEDKSDAFCLFCG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00066785; iTF_01284324; iTF_00066893; iTF_00066678; iTF_00066526; iTF_00066537; iTF_00066479; iTF_00066518; iTF_00066875; iTF_00066815; iTF_01105765; iTF_00464637; iTF_00466051; iTF_00466000; iTF_00465981;
- 90% Identity
- -
- 80% Identity
- -