Ocom068861.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068991.1:15135446-15137353[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-08 6.3e-06 28.2 0.0 3 40 17 53 15 58 0.91
Sequence Information
- Coding Sequence
- atgCCAAGGAACTATCatagaaaaagtaaaatagcATCGTGGGATAGTGACCAGTTAAAGGCAGCTCTAAATGCCATTCGCAATGGCAGAAGTACCAGAGAAGTGTCTAGAACATTTGCCATTCCTCGAAGTAGCTTGCAGAAACGATTGAAACAAAATTGTGATGCTGGGCCTTCTTTAGGTCGCAAGCCAATATTTACAAAAGATGAAGaaaaacatctagcagatcataTTATTCATCTTTCCAAAGTTTTTTATGGCATTTCGAGAGAAGAAACAAAAAGATGCGCATATGCTTAtgcggaaaaaaataatatggcTTTTCCTTTTAACAGAGAAAAACAAAGCGCAGGTGATGATTGGCTGCGCGGTTTTATGACAAGAAATCCATCAATAACTCTTCGTAAACCTGAAGCAACATCTATAAATCGAATCACAGCTTTCAATAAGGAAGAGGTTACAATATTTTTCAACAATCTCGAAAAAGTTAAAGAAAAGTATAACTTCGACTCTCATAGAATTTTCAACATAGATGAGACAGGAATCTCTACAGTACAGAGGCCGGGAAAAATATTAGCGCAGAAGGGACTGAAGCAAGTGGGATTTGCTACGAGCTGGGAAAGGGGTAGAAACATTACAGTTGTATGTGGTTTCAGCGCAACAGGCATTTATGTCCCGCCAATGTTTGTTTATGCGAGAAAACGAATGAATCCGCAGCTTCAGAGAGGGGGTCCACCTGGAGCTCTATACACTTGTTCCAACAAAGGTTGGATTACTGAAGAACTTTTTGTGCAATATCTACGACATTTCCAAAAATTTGTGAAAGCTAGCTTGGAAGATCCAGTTCTCCTGGTGATGGACAATCATTCCACGCACTGCACTTTAGAAGCttatgaattttgcaagacCACTGGCATTATACTGTTGTCGATCCCCCCACACACTTCACATCGGCTCCAACCACTAGATGTTAGTTTTTACGGTCCACTGAAAATAGCGTACAATTCAGAATGCAGCAAATACTTAAGGAATCATCCGCATGAAAAAATAACTCCTTTTGAAATTGCGGAGCTCTTCAATAAAGCGTTTATGAAGGTAGATACAACAGAAAAAGCAGTAAAAGGCTTTGAAGCAACAGGAATTTGTCCCTGCAATCCTGACGTGTTCACCATCGAAGATTTTGAGCCGGCTCgtctttacagtaacttaaaccGTGAAAATGGAGATCCTATTAACGAAATCGTCGTCCATGAACTCCATGAACGCCATGAAGCGCCAGAGAGACAAACAGTTTTAGTTTCGCAACCTGCAGCTTCTGAAGAAAATATTGAAACAATAGAGCTGACAGAAAGACAGAATTCAACTATTGAAAAATCATTCCAGGAAATTTTACCTCTACCAGGACcatcaaaattatatattagTAATAGGTCGACGGCAAAACAGCATTCCCAAATTATAACGTCTACCCCATACAAAACagttttagaagaaaaatctaacaaaaaagaagagaaagctaacaaaaaagaagagagagctaataaaaataaaaaggtattaAAGCAACAGAAATGTATTAAAACAAGttataaaagaaaagttttttctgacgacgatgaagatgaaaaaGAAAATCAAGAACTAGTTAAACAGAGAGAGAAGCTACCTAGGAGAACAATTAAAACGCAGACTTATACTGAGGTCAGCTCTGATGATGAAGATAAAGACGATGAAGACAATGATAAAGATGCAATAGGAGGTGAAAACGACATAATATGTTTAGTGTGTGGGGAGTTCGGCAAAAATAGGGAACTCTGGATAAGATGTATTCTATGTGGGAATTGGGCTCACAAAGCCTGTACAGACAATGAGAAACATGTATACGTGTGTGACTATTGctgctaa
- Protein Sequence
- MPRNYHRKSKIASWDSDQLKAALNAIRNGRSTREVSRTFAIPRSSLQKRLKQNCDAGPSLGRKPIFTKDEEKHLADHIIHLSKVFYGISREETKRCAYAYAEKNNMAFPFNREKQSAGDDWLRGFMTRNPSITLRKPEATSINRITAFNKEEVTIFFNNLEKVKEKYNFDSHRIFNIDETGISTVQRPGKILAQKGLKQVGFATSWERGRNITVVCGFSATGIYVPPMFVYARKRMNPQLQRGGPPGALYTCSNKGWITEELFVQYLRHFQKFVKASLEDPVLLVMDNHSTHCTLEAYEFCKTTGIILLSIPPHTSHRLQPLDVSFYGPLKIAYNSECSKYLRNHPHEKITPFEIAELFNKAFMKVDTTEKAVKGFEATGICPCNPDVFTIEDFEPARLYSNLNRENGDPINEIVVHELHERHEAPERQTVLVSQPAASEENIETIELTERQNSTIEKSFQEILPLPGPSKLYISNRSTAKQHSQIITSTPYKTVLEEKSNKKEEKANKKEERANKNKKVLKQQKCIKTSYKRKVFSDDDEDEKENQELVKQREKLPRRTIKTQTYTEVSSDDEDKDDEDNDKDAIGGENDIICLVCGEFGKNRELWIRCILCGNWAHKACTDNEKHVYVCDYCC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01105756; iTF_01105758; iTF_01105759; iTF_00329155; iTF_00329156; iTF_00329144; iTF_01105708; iTF_01105750; iTF_01105757; iTF_00329151; iTF_00329152;
- 90% Identity
- iTF_01105756; iTF_01105758; iTF_01105759; iTF_01105750; iTF_01105757;
- 80% Identity
- -