Basic Information

Insect: Ophraella communa
Gene Symbol: pol_2
Assembly: GCA_035357415.1
Location: CM068979.1:65427136-65433492[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 7.9e-09 1.7e-06 30.0 0.0 8 38 635 664 633 669 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	7.9e-09	1.7e-06	30.0	0.0	8	38	635	664	633	669	0.89

Sequence Information

Coding Sequence: ATGTCTACGGAAAATCCGAACCCAGGGAGTTCATTTGCTAGATACCTACGACCCAACAAGTTCGATGTTGACCATAGCAGTATCGGGGCTGATGCCAAATGGTTGCATTGGTTCTATACCTTCGAAAACTTCATGGATGCGGAGGCTCCTCCTGGAACACCTACGCCTGACTCGATAATGCTAAGGCTATTGCAAAACCATCTATCCGCAAGAATTTTCGCTTACATAAAGGAATGTCAAACATACACCGAAGCTATTGAGGCTGTTACGGCTAGCGAGCACCAGAGTCAAGCTATACGTGGCGCTTTCATTGCGGGCATCacttctattaaaataaaagaacgGCTATTAGAAAACCCATCATTGACGCTTGATGAATCTATCAAACAAGCTCTTGTTTTGGAAACGGCCCAAAGGGATTTACAGACCATGGGAGATCGCAACGAATCTCTAAACGCCTTATCGACGACGCCGAAACACGACGCTGAGCCACATTCATCACAAAATAATACCGATGTAGTGGCAGCAACTCAACCAATAAAATGCTTTTTCTGTGGGGGTAAGGTACACCGAAGAATTAAATGCCCTGCTTTCCGCGCTGAATGCCAAAACTGTGGAAAGGTAGGTCATTTTGCCAAGGTCTGTCGATCAACGAAGAAACCCCAAACAAACAACGCAGTCTACTTCCCGCCCGACTCTGTTTACTCGGCCGCATCACCGTCTAGCCTCAGACAGTCAACAGTCCCGATTACTGTCAACGATATCCGTGCTGACGCCCTTATCGACACAGGCAGctctgtttgttttattgacaAGAAAATCGCtcaaattatgaaaattaaacaGAGACCTTACAGACAAGCAATATCTCTCGCTTCAATGAGCCACACTTCCTATGTAGATGGTATTTGCTTCGCCATTCTCAACATTGGTAAGCATAACTACAAGCAAAGGCCTCTCCTTGTTGTCAACAACCTGTGTGCGGATTTAATTGTTGGCCACGATTTACTCAGAGACCATTCAAAACTAGAGTTGCAATTTGGTGGCACAAAAGAGCCGCTACAGGTCTGTGTCATGGAAGCGACGGTCGCACCAGCGTCCGTTTTTACTCACTTATCTGCGGATATCGTACCAATTGCTGTGAAATCAAGGAGACGAACAGAAGACGaagaaatttttatcaaagaCGAGATTTCAAAGTATCGCTCCGTGGCGAGCCCAAACGCCTACCCTTTACCAAGCGTTGCATCTATTGTCTCCAAGGTTGCTAAATTCAATGTTTTCAGTCAAATCGACTTAAAAGGCGCCTATCACCAAGTCCCTATTCTCGAAAGTGAAAAGATTTACACTGCATTCGAAGCCGGTGGAAAATTATACCAGTTTACCAGAATTCCATTCGGCGTTACCAATGGCGTGGCTGCTTTTCAGCGTATCCTGGAAATTGTAATCGAAAAAGAGAAACTCGAGGGGACATTCGCATATCTTGGCGACGTGACAGCATGTGGAAAGGACCAAGAACAGCACGATAAAAATCTACAGAAATTTATGGCAGCAGCAGCGAAATACAAATTAACGCTAAATGAGAATAAATGCCATTTCAACAAGTTGTTACGGCCGTTGTACATTCATAGTGATAGAGGCTCATCTTTTATGTCGGAAGAACAAGCATTTCTCAGAAACCAAGGCATTGCTTCTTCGCGAACGACACCCTACAATCCCGCTGGCAACGGCCAGGTCGAAAAATTAAATGGAACTCTGTGGCGAACCATACAATTGAACCTGCGATCCAAGAACCTCCCCATAGAAAACTGGAAATTCGCACTTAATCCAGCCCTACACTcaaaATACATCAAAGCGATAAATAAGACAAAAATACGGTATTTACATAATGTAGTAGGACAAGCTCTTACAGAAATACGGCAAGGTATGTCTGTATATAAAGCCTCCCGAATTTACGGAATACCACAGACTACATTGaagaataaaaaacaacagaGAGATATTTTTAAGCCAAGTGAAAAACCACCTATCTTAACAGCCGAAGAAGAAAGCCTAATAGTTGATTGGATTCATTTTCTAGGAGAAGCTGGATTTCTAGTGTATAGAACTCAGCTAATAAGTATAACAAAAAAGATAACACCGACTGTTGCCATAGTTGATGAGTTTGTAGAGTATCAAAGACGACTTGAAGCCGAAAAAATTGTAAAggaggaaaagaaaaaagatagacttgctaaaaaaatgaaaagaaaatga
Protein Sequence: MSTENPNPGSSFARYLRPNKFDVDHSSIGADAKWLHWFYTFENFMDAEAPPGTPTPDSIMLRLLQNHLSARIFAYIKECQTYTEAIEAVTASEHQSQAIRGAFIAGITSIKIKERLLENPSLTLDESIKQALVLETAQRDLQTMGDRNESLNALSTTPKHDAEPHSSQNNTDVVAATQPIKCFFCGGKVHRRIKCPAFRAECQNCGKVGHFAKVCRSTKKPQTNNAVYFPPDSVYSAASPSSLRQSTVPITVNDIRADALIDTGSSVCFIDKKIAQIMKIKQRPYRQAISLASMSHTSYVDGICFAILNIGKHNYKQRPLLVVNNLCADLIVGHDLLRDHSKLELQFGGTKEPLQVCVMEATVAPASVFTHLSADIVPIAVKSRRRTEDEEIFIKDEISKYRSVASPNAYPLPSVASIVSKVAKFNVFSQIDLKGAYHQVPILESEKIYTAFEAGGKLYQFTRIPFGVTNGVAAFQRILEIVIEKEKLEGTFAYLGDVTACGKDQEQHDKNLQKFMAAAAKYKLTLNENKCHFNKLLRPLYIHSDRGSSFMSEEQAFLRNQGIASSRTTPYNPAGNGQVEKLNGTLWRTIQLNLRSKNLPIENWKFALNPALHSKYIKAINKTKIRYLHNVVGQALTEIRQGMSVYKASRIYGIPQTTLKNKKQQRDIFKPSEKPPILTAEEESLIVDWIHFLGEAGFLVYRTQLISITKKITPTVAIVDEFVEYQRRLEAEKIVKEEKKKDRLAKKMKRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -