Ocom027777.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068981.1:40169782-40170471[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.7e-09 1.7e-06 30.0 0.0 5 39 22 56 18 59 0.92
Sequence Information
- Coding Sequence
- ATGCCTAGGACTTATAGGAAGCCGCTTGGAAGTCGACAGTACAAAAATTATTCGGATGCAGTGATTGAAAATGCACTGCAATCTATATTAGACGGACGTTTGACGATTCGTGGCGCTGCAAAAGAATTTAAAATCCCCTAtggaactctatacaataggtaTAATGGACAACACATAAATAGACCTGGAGCCCAAACTGTGTTCACGGACGCTCAAGAAAAGGCTATTCTTAAATCAGCAGCAAAGTGTACCGAATGGGGGTTTCCTCTAAGTCTGTTTGATTTTCGTATGTTCGCTAAGGCTTGTTTAGACCGAACGGGACGAATAGTTGCAAAATTTTCCAATAATGTGCCGGGTATTGACTGGGCCTACTCGGTCTTACGACGTCATCAGGATTCTTACAGTCAGCGTGTTGCAGCTAATATAAAAAGGGCTCGAGCTGGAGtttccaaacaaaatatagaagaatattttaaacatCTGGAAAGTGTTGTTAAAAACGTGCCTAGTAGTAATATTTTCAACTATGATGAGTCAAATTTAAGCGACGACCCGGGCAAGAAACGCTATATATATCGACGAGGAGTCAAATacccagaaaaaataataaacttttccaAGAGTTGCACGTCTATCATGGTTTGTGGGTCTGCAAATGGTGTGATCAAAGTAACCCCGATCAATGTATAA
- Protein Sequence
- MPRTYRKPLGSRQYKNYSDAVIENALQSILDGRLTIRGAAKEFKIPYGTLYNRYNGQHINRPGAQTVFTDAQEKAILKSAAKCTEWGFPLSLFDFRMFAKACLDRTGRIVAKFSNNVPGIDWAYSVLRRHQDSYSQRVAANIKRARAGVSKQNIEEYFKHLESVVKNVPSSNIFNYDESNLSDDPGKKRYIYRRGVKYPEKIINFSKSCTSIMVCGSANGVIKVTPINV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00988203; iTF_00987907;
- 90% Identity
- iTF_00988203; iTF_00987907;
- 80% Identity
- -