Ocom031406.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068982.1:25540129-25540554[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-09 1.1e-06 30.7 0.0 2 36 16 50 15 56 0.93
Sequence Information
- Coding Sequence
- ATGGTTGGTAACTATGTCAGAAAAACTGACAGGCAAAAATGGGACGAGAATGCAATGGAAAATGCTATACGAGCCGTTGAAAGTCGGCAAATGGGTTGGCTGAAAGCGTCAAAAACTTTTGGTGTCCCTTTTACTACTCTCAGAAGAAGAGCTACAGATGCCAATAAAACGATTAAACATAGTGCAAAAGGTCTTGGTAGATTCTATACAACATTTACGAAGGAGCAAGAACGCATGTTAGTTGAACATATGAAGCTATTGGAGCAACGACTATTTGGGCTCACCTGTGACGACTTACGACGACTAGTTTATGATTGGGCAGAAGCAAATAAAATAGACCACAGATTTAATAGAACCACAAAACGAGCTGGATGGGACTGGGTTAGAGGTTTTAGCCTTTACGAAAGCCTGAAAATACCTCTATAG
- Protein Sequence
- MVGNYVRKTDRQKWDENAMENAIRAVESRQMGWLKASKTFGVPFTTLRRRATDANKTIKHSAKGLGRFYTTFTKEQERMLVEHMKLLEQRLFGLTCDDLRRLVYDWAEANKIDHRFNRTTKRAGWDWVRGFSLYESLKIPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01105704; iTF_00465986; iTF_00066033; iTF_01284281; iTF_00398929; iTF_01252757; iTF_01187257;
- 90% Identity
- iTF_00066033;
- 80% Identity
- -