Ocom028895.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068982.1:7290440-7291039[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-10 2.7e-08 35.8 0.0 1 42 15 56 15 59 0.93
Sequence Information
- Coding Sequence
- ATGCCTTCCAATTATAAAAGGAAATCTAACCGCAATTCGTGGTCCGAAGAGTCGATGGCTAGAGCCCTGGAGTCTGTACGAGACGGTACTCATGGTTTTCTGAGTGCTGCGAAAACGTTTAATGTTCCCAAGTCAACACTAGAACGAAGATTTAAGGATACAAATCAAGTAGCAAAAGGAACCGCAAAGAAACTTGGCAGCAGGAAGTTAACATTCCCGGTGGAATTGAAACAAGAGTTAGTAGAATATGCAAAAAACATGGAGATGATGTTATATGGATTAACAACAAGAAGTATTCGTAGTCTTGCACTCCAATTGGCTGAAATTAATCATATCGAACATCATTTCAACAAGACCACCAAACTAGCTGGATGGCACTGGTTACGTTCGTTTTTGCAGCGACATAAGCTCTCTTTGCGATTGCCAGAAGCTACTTCGGCAGCTAGGGCTCGAGGCTTCAACAAACaagcaataacttttttttttgatattttggaGCCCCTTCAAGAAGTTTACTCCAAATCGAATTTTCAATGTGGACGAAACGGGGATCACAACAGTGCAAGGACGTCCATCAAAGGTAGTGGCCTTGAGAGGTAG
- Protein Sequence
- MPSNYKRKSNRNSWSEESMARALESVRDGTHGFLSAAKTFNVPKSTLERRFKDTNQVAKGTAKKLGSRKLTFPVELKQELVEYAKNMEMMLYGLTTRSIRSLALQLAEINHIEHHFNKTTKLAGWHWLRSFLQRHKLSLRLPEATSAARARGFNKQAITFFFDILEPLQEVYSKSNFQCGRNGDHNSARTSIKGSGLER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01105578; iTF_01105579; iTF_01105580; iTF_01105581; iTF_00436527; iTF_01105584; iTF_01105585; iTF_01105586; iTF_00436534; iTF_01105590; iTF_00436535; iTF_01105592; iTF_01105660;
- 90% Identity
- iTF_00436534;
- 80% Identity
- -