Ocom042071.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068985.1:23169420-23169932[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.4e-11 2.1e-08 36.2 0.0 1 42 15 56 15 59 0.93
Sequence Information
- Coding Sequence
- ATGCCTTCCAATTATAAAAGGAAATCTAACCGCAATTCGTGGTCCGAAGAGTCGATGGCTAGAGCCCTGGAGTCTGTACGAGACGGTACTCATGGTTTTCTGAGTGCTGCGAAAACGTTTAATGTTCCCAAGTCAACACTAGAACGAAGATTTAAGGATACAAATCAAGTAGCAAAAGGAACCGCAAAGAAACTTGGCAGCAGGAAGTTAACATTCCCGGTGGAATTGGAACAAGAGTTAGTAGAATATGCAAAAAACATGGAGATGATGTTATATGGATTAACAACAAGAAGTATTCGTAGTCTTGCATTCCAATTGGCTGAAATTAATCATATCGAACATCATTTCAACAAGACCACCAAACTAGCTGGATGGCACTGGTTACGTTCGTTTTTGCAGCGACATAAGCTCTCTTTGCGATTGCCAGAAGCTACTTCGGCAGCTAGGGCTCGAGGCTTCAACAAACAAGcaataacttttttgatattttggaGCCCCTTCAAGATAAGATGA
- Protein Sequence
- MPSNYKRKSNRNSWSEESMARALESVRDGTHGFLSAAKTFNVPKSTLERRFKDTNQVAKGTAKKLGSRKLTFPVELEQELVEYAKNMEMMLYGLTTRSIRSLAFQLAEINHIEHHFNKTTKLAGWHWLRSFLQRHKLSLRLPEATSAARARGFNKQAITFLIFWSPFKIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00436639;
- 90% Identity
- iTF_00436534;
- 80% Identity
- iTF_01105584;