Ocom046009.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068986.1:21390532-21392005[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.3e-11 1.4e-08 36.7 0.0 2 42 18 58 17 61 0.86
Sequence Information
- Coding Sequence
- ATGCCGAACAAATACCAAAGAAAAGCTGTAAATATGCGTGGCAATTGGTCGCAAGAAAATTTGATAAATGCTGTAAATAGTGTGAAGAATGATAATATGTCTGTTCGACGAGCGTCTGTAATGTTTAACATACCACGTAAAACTTTAGAACGTAGAATAAAATCCGGAAACACGGAAAAGGGATCTATGGGACCCAGCAGTGTCTTTGGGAGAGAAAACGAAGATCGCCTTTCTCGACATATTTTGAACATGCAAAGCAAAGGTTTTCCGTTGACTCGAGATGATTTAAGAACTATTGCTTTTCAATTTgctgaacaattaaatattaaacacaGGTTCAACAAAGAAACCCAAAAAGCTGGTTATGATTggctttgtttgtttttaagccGAAACCCTCGCATTACCGTTCGCAAATCAGAAGGTGTTTCGCTAGCTAGAACATCCGCAATGAACAAAAAAGAAGTCGGAGAGTATTTTGACCTACTAGAACAAATTATGACCGAACATTCTCTATTTGATAAGCCTGCCAACATTTTTAATATCGATGAAACAGGCCTTCAATTGAACAACAGGCCAGGAGAAGTACTCGCACAAAAAGGTTCAAAAGTGGTCTCAACTGTAACTTCCACAGAAAAAGGAGAAACGATTAGCTTGGTTGTTTGCTGCAATGCGGAAGGTGTGGTTTTATTAATTCTGGACGGTCACGCTTCACATGTGAATTCTGTAGAGATGCTTGAATTTGCCGAAACACATCAAGTAATTCTTTTATGCTTGCCGAGCCATACCACACACTATTTGCAGCCATTAGACCGCAGCTTTTTCAAATCCTTAAAAAGCCATTTTTACGAAACGTGTCGCTTGTGGCTTAAGAATCATGTCGGACGACGAATTACTCGATATCAATTTGGTGAACTTCTCACTCCAGCCTGGGGCAAGGCCGCTACAACTCAAAATGGCTCGTCAGGATTTAAAGCAACGGGGATCATGCCTTTTAATCGCGAAATAATTCCAGATTACGCCTTCTCTAACGAAGAAACCATgttcgaaaatatttctccaACTCAAATTGAGCAAAAGCAACGACCAACTAGAGCAAATGGTACTGATGACTCTGAAGTACAACCATTGCCATCGTGTTCCAAAGACAATACCGAAACTATCACCCCTTCCAAGATATTGGTCGATTTGTCCCCTGTTGTTTTGGAGAAAGCCGTTGTAGTTAGGAAACGAGCCAAGCAAGTGGCATCAATTCTAACATCACCGGAGCACTTAGCAGTTCGAagggaaaaagaaaaaagttga
- Protein Sequence
- MPNKYQRKAVNMRGNWSQENLINAVNSVKNDNMSVRRASVMFNIPRKTLERRIKSGNTEKGSMGPSSVFGRENEDRLSRHILNMQSKGFPLTRDDLRTIAFQFAEQLNIKHRFNKETQKAGYDWLCLFLSRNPRITVRKSEGVSLARTSAMNKKEVGEYFDLLEQIMTEHSLFDKPANIFNIDETGLQLNNRPGEVLAQKGSKVVSTVTSTEKGETISLVVCCNAEGVVLLILDGHASHVNSVEMLEFAETHQVILLCLPSHTTHYLQPLDRSFFKSLKSHFYETCRLWLKNHVGRRITRYQFGELLTPAWGKAATTQNGSSGFKATGIMPFNREIIPDYAFSNEETMFENISPTQIEQKQRPTRANGTDDSEVQPLPSCSKDNTETITPSKILVDLSPVVLEKAVVVRKRAKQVASILTSPEHLAVRREKEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01105542;
- 90% Identity
- iTF_01105543; iTF_01105571; iTF_01105542; iTF_01105540;
- 80% Identity
- -