Ocom078672.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068994.1:1820327-1820842[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-11 3.6e-09 38.6 0.0 1 37 17 53 17 57 0.94 2 2 6.3 1.4e+03 1.5 0.1 12 24 137 150 135 151 0.75
Sequence Information
- Coding Sequence
- ATGCCAACATTTTACAAGAGAAAACGGACATCTACACGTGGTGAGTGGACCGAAGAATCATTAAGAAATGCTGTAAGTGCTGTTCAAAATGACGGCATGAGTTTAAACATGGCAGCAAGAACGTTTGGAGTCCCTTGGAGTACACTAAAAAGAAGAATTACTAATAATTGTCTAGAAAAAAAATCTCTTGGTCCATCGTCACTGCTAGGTATCGCAAATGAGAAGAAAATTGttcaacatattaaaaaaatgcaaaaatacgGTTTTACACCTACAAGATCTGAGGTGCGGTCAATGGCTTATAAATTAGCTGAACAGTTACAAAtcaaacataattttaataaaacaacagaACTGGCGGGCATCGATTGgttgcatttatttttaaatcgcaATTCTGAACTTTCAATAAGAAAATCCGAGGGCACTTCCCAAGCTCGAGCTCAAAATATGAACAAGGAAAATGTCACAAAATActtcattttgtttcatttcatTTGCTTCAAGATATTTTAG
- Protein Sequence
- MPTFYKRKRTSTRGEWTEESLRNAVSAVQNDGMSLNMAARTFGVPWSTLKRRITNNCLEKKSLGPSSLLGIANEKKIVQHIKKMQKYGFTPTRSEVRSMAYKLAEQLQIKHNFNKTTELAGIDWLHLFLNRNSELSIRKSEGTSQARAQNMNKENVTKYFILFHFICFKIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01105536;
- 90% Identity
- iTF_01105536;
- 80% Identity
- -