Basic Information

Gene Symbol
stc_1
Assembly
GCA_943138245.1
Location
CALPBP010000717.1:277798-306659[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 1.4e-05 0.41 12.3 17.1 3 18 1049 1064 1033 1065 0.88
2 13 6.5e-07 0.018 16.6 8.1 1 18 1101 1118 1101 1119 0.98
3 13 0.66 1.9e+04 -2.6 1.4 6 10 1149 1153 1148 1153 0.90
4 13 5.7e-10 1.6e-05 26.4 13.2 1 18 1159 1176 1159 1177 0.97
5 13 2.2e-06 0.062 15.0 10.7 4 18 1225 1239 1218 1240 0.87
6 13 2 5.7e+04 -5.4 3.7 1 10 1249 1258 1249 1258 0.82
7 13 2 5.7e+04 -4.2 2.0 5 10 1269 1274 1269 1274 0.93
8 13 0.003 87 4.9 10.8 1 11 1280 1290 1280 1301 0.94
9 13 4.1e-10 1.2e-05 26.9 11.8 1 19 1307 1325 1307 1325 0.98
10 13 2 5.7e+04 -7.6 13.5 9 19 1371 1382 1361 1382 0.71
11 13 0.51 1.5e+04 -2.2 1.1 8 13 1387 1392 1386 1393 0.84
12 13 6.4e-08 0.0018 19.8 12.5 1 16 1418 1433 1418 1440 0.87
13 13 0.005 1.4e+02 4.2 15.9 1 19 1450 1469 1450 1469 0.96

Sequence Information

Coding Sequence
ATGGAGTCAACAGAATGTTTGCCAGCCACAAGAAACGTGAGTGCCAACCAGTATCCGGATTCCAACAAGTCGAGCAAACCCTTGACGACTTCCTGGTCTTCAGGACCGGATGTGTCTTTCCAGAGAGGCGGAAATTTGCATCGTTACGTCAGAAGCAAGTCACTCGTCAACATCTCGACAGAAGGATACAGCAACAGAGATATAAGACTCATTCGAGAACGGTTACTCAGGACGCAGTCTCATCCGCAACCCGCTGCAATTAAACATTTCAGTCGAAGTCAGAAGCTAACGTTAGCTTCTTTAGCTTTAGTAGATTTTATGAGTTTTTGTTCAATGTCTATAATGGCACCATTTTTTCCTAAAGAAGCTGGTGAAAAAGGAATGTCTAACACCATGTCTGGATTCGTCTTTAGTTTTTATGCTCTAGTCATGTTTATTTCATCACCTCTTTTTGGAAAGATTTTGCCAAAAGTCGGcccgaaatttttatttatgtcggGGATATTTATTGCAGGATTATGCAATTTATTATTTGGATTATTAGAGTATATAAATGATTACACATTATTTACAGTATTTTGCCTAGTTGTAAGGGGCGTTGAAGCTTTAGGAGCAAGTGCATATTCTACTGCAAGTTATGTTTTTGTAGTGAACACTTTTCCAAATAACATTGGGACTGTTATTggAATTTTAGAAACTTTTGTGGGCTTAGGCATGAGTACGGGCCCAGCAATTGGTGGAATTTTATATTCGCTTGGTGGATTCGCTCTTCCATTTTATGTTCTAGGCATAATTATGGTACTCATAATTCCTATCAATTTATGTTTACTACCTAGGACTGAAGaatacaaCGTGGAAACAAAAAGTGGCTCAATTTGGGAACTGATCAAAGTCCCATCTGTGATAGTAACTGGTCTCACGGTTGTTGTAGTATCGAATGTATGGGGGTTTTTGGACCCGACACTGGAACCTCACCTAAGACAATTTAATTTAAGCCCAGAAAAGGttggtctaatatttttactcTTCTCTGCTTTGTACGGAGTATCCAGCCCTGCCTGGGGTTGGCTGGCAGATAAAGTCAACCATCATTGGTCTATGATGGTTTGGGGCCTTGCATTTTGCACTGTGGGCTTGCTGCTATTAGGCCCATGCCCTTTCTTGCCCTTCTTGACAAGAGAGGGCGGTTGCGGCAATTCACTGACAACATATAGTTTAGTAGCAGGAGTATGGTCGTGCATGTACGCCTTAGGAGAAGTAATAGGAccatttttgggaggttttttccTCCAACATTTCGGTTTTCCTTTAGCTGCCACAGTCATGGCGGCCATGACATTCACACTGgcTATTATTACTCTCATATACTTTCTACTTAAAGAAAAAAACAGCTCTGAATATGAAAGAGTTTCCGATAGCGGAATAAGCGCATCTTGGAATAGCTCTTACTCTTCGGCTGATTTAGAAAGTGGTGATGATCTTACCGAAAACGAAAAACAACCTTTACTTAATAGAAATGATGGTGATCATATTTTGTACACAATGGAAAAAGTTATGTATTATGAGCAAAGCAGAAAGCAAGATAAAGAAggTATAGAACACGAAACATCTCAAGAAAATTTGAGGGCCATGGCCCAATGGAATCCGTTTTACGGAGTTCCAAATCAATCGGATTCTGTGTATGAAGAACAGAATTtaagttctcaaaattattatgGAATGCAATCTGCTCCATATGGTTCAGTATCAATGCAACCTTATAACGGATATTATATTCCAAACAATATTTATTCCAATTACGGAAATGTATACAATGTTCAAGAACTTGAAGCGCAACAATTTTCCgcttataatcaaaatacaaaCCCCTCTAATTCCAGTACAAATGATGTTGCATCATCTTCAAACAATCAAatgaaacacaataaaagtgatAACAGAGAAAATGCAGGAGTTGTGTCAaatgattcttccaattcaacaTTGCATGCTACAGCCGCAGAATTTAAGCCGGGTTCATCTGTTGCAACTAATTCACAAATAAGTTCTAAAACTTTTTATCGAAATAGCCAAAAACATAAAGTTGATAATCGAAATAGTAAAGGAGCAATCCGTAAAACTAAAGAAGAAGTTCCAATTAATGATGAATTAGTAAAAACAGAAACTAAACCTAATAATCAAAGATATAGTAGAAATAATTTAGGGCAGAACTATAATAACAAATCATACAAAGATCGCAATAactatagtaataaaaattataatagaagGGAAGAACCCAACAATGAAGTAGAAAATAATCAACAAAGTAACTCCAGGTATGAAAACAGGAATAATAGATATGAAAATAGAGATTCAGAAAATAGGAGTAACAGATATGATAAAGACTCCGAACCTCGCAATCACAGATATGAGAATCGCGAACAAGAAACAAGTTACAACAGGTATGAAAACAGGGAAAATAATTACGGAAGAAATTACAGAAGACCCGAATACAACCGCGAAAACAATGAATCTTCAAGAGCAAACTACCGTCAAAACCGTCCCCGCGAAGAAAACTACAACAGAAACTACCGCGACTATCCTGACAGAAACAGCGACCGAAATTCTTTCCCCCGAGACAGTTTCAAACAATTCAACTCAAAGCCCTCCTATCGAAACACCCGGTATGACAACAAAGGCTATGAAAATTGGCGCACTGGTCCAACTGCCGAACAAGACAAGAAAAACGAAAGCAAAGGAAAAGACGATAAAAGTAGATATGAAGTCGAGAGGAAAGTATATCGAAATGATAATAGAATAGGAAAAGATGATGATAAATCGCAAAGAGACCGCCTGACAGACCAAGTGAATAAAGGAACGTTGGAATGTTTGGTTTGTTGTGATCGAGTAAGACAGCAGGATAAGATTTGGTACTGTCAGATGTGTTACCATATCTTTCATTTCCGGTGTATTATTAAATGGGGAAATACTTCAAAAGACGATAACGGCTGGCGCTGCCCGGCTTGCCAACACGTCTCCTCCGAAATCCCTTCCTGTTGCGTCTGCTACTGCGGCAAAATAAACGACCCTGCTTACAACCCCGGCGATACGGCCCATAGTTGCGGTGACGAATGCGGCCGATTAGGCGTTAAACCCGGCTGTATCCACCGCTGTAACTTACTGTGCCACCCAGGCCCATGTCCAAAATGCGAAGCTCTCATTTCCAAACACTGCAACTGCGGAGCGACCACCCAAATGGTCAAATGCAGCGCGGAGGCTGTCTTAGTATGTACGGCCATTTGCAGCAAACAATTAAAATGCGGGGTGCATAAATGCGATAAGATTTGCCACAGGGATGATTGCGAAGAATGCATGGAAACTATTGATCAAGagtgTTATTGTggaaaatccaataaaataatcCCGTGTAGTAAAGAGCAGgttgatataaaatattatagttgTGAACAAGTGTGTGATAAGTTATTGAGTTGTGGCAACCATAAATGTAAAGATATTTGCCATCCTGGTGATTGTGCACCGTGTGAAAGGGCACCAGAACAAGTTAAGACTTGTCCATGTGGAAAATCTAAACTTGAAGTTGTAAGAAGTTCATGTCTTGATCCTATTCCTTGTTGTGGAAAGatatgcGGCAAACGTTATCCCCTTTGCGGCACTTCCTCCACCCCTCACACTTGCAAATCCGAATGCCACGACGGCCTTTGCCCAAGCTGCCTCCTCACCAGCTTCGTCCGTTGCCGTTGCGGCCACATGAACTGCGAACTAACTTGCTCCGAACTAGTCTCCCGCACAGACGACGCCCGCTGCGAGAAAAAGTGCACTAAAAAACGCTCTTGCGGTCGTCATAAATGCAACCAACTCTGCTGCATTGACATAGACCACATCTGCCCGCTCCCTTGCAATCATATGTTGACGTGCGGGCTGCACCGGTGCGAGGAGACGTGCCACAAAGGCCGATGCAAGCCGTGCTGGAGGATCAGTTTTGATGAGCTGTATTGTGAGTGTGGATCAGCGGTGATTTATCCGCCGGTGCCGTGTGGGACGAAAAGGCCGCATTGTGTAAAGCCGTGTACTAGGCAGCATCAGTGTGAACATGAGCCGTTGCATCAGTGTCATAGTCAGCCGGAGTGTCCGCCTTGTACGGTTTTGACGGCGAAGTTGTGTCACGGAGGACATGAGaaacgcACAACAATTCCATGCCATCAAAAAGACTTCTCTTGCGGTTTGCCCTGCGGCAAAGACCTTCCTTGCGGTCGCCACAAATGCCAACTACCTTGCCACAAAGGCCCCTGCTTGAGAGAAGGCCAAAGTTGCACTCAATCTTGCACGGTTATTCGCGAAGGTTGCGGTCATCCTTGTAATTTACCATGCCATGAACCACCGTGTCAAGATTCTCCTTGTAAAGAATCTGTTAAAGTGACATGCCAATGTGGTCTAAGATCCTCAACAAGAGTTTGTGTGGACATGACAGGGGAGTATCAGAGAATTGCGACGTCTATGCTGGCGAGCAAAATGGCGGATATGCAGCTGGGGCATTCGATTGATATTGGGGATATTGTGGGGACTAATGCGAGGAAGCAGACCCTCAAAACTTTGGAATGCAACGACGAATGCCGACTAGTAGAAAGAAACCGCCGCCTTGCAATAGGCCTCCAAATTCGAAACCCTGATTTGAGTGCGAAACTAACGCCTCGTTATTCAGATTTCATGCGTCAGTGGACTAAAAAAGACACTGCATTTTGCCAAATGGTTCATGACAAACTTACAGAGCTTGTTCAACTTGCTAAACAGtcaaaACAAAAATCTCGTAGTTTTTCATTCCCGTCTATGAACCGAGAAAAAAGgcaatttattcatgaatactGCGAGCATTTCGGGTGCGAAAGTGCTGCGTACGATCAAGAACCTAATCGGAACGTTGTTGCAACTGCTGCTAGAGATAAgGCCTGGTTACCAAGTTGCAGTCTGTTGGAATTAATCCAACGTGAAAGCGGCCTTCGCAAAGTGCCTGGCCCGATCCTAAATCGCCCGTTGGGCGTCTCCAAAACATCGGACACGGTCTCTTTAAAAATACCGAATAAATCAACAGCTGGTGCTAGTTCATCTACCTCATTCTCAAGCGCCCTTCAGCAGCAAAAAACGCCCGAAGATATAgactattttaattttccatcaGGAAGCAAATAA
Protein Sequence
MESTECLPATRNVSANQYPDSNKSSKPLTTSWSSGPDVSFQRGGNLHRYVRSKSLVNISTEGYSNRDIRLIRERLLRTQSHPQPAAIKHFSRSQKLTLASLALVDFMSFCSMSIMAPFFPKEAGEKGMSNTMSGFVFSFYALVMFISSPLFGKILPKVGPKFLFMSGIFIAGLCNLLFGLLEYINDYTLFTVFCLVVRGVEALGASAYSTASYVFVVNTFPNNIGTVIGILETFVGLGMSTGPAIGGILYSLGGFALPFYVLGIIMVLIIPINLCLLPRTEEYNVETKSGSIWELIKVPSVIVTGLTVVVVSNVWGFLDPTLEPHLRQFNLSPEKVGLIFLLFSALYGVSSPAWGWLADKVNHHWSMMVWGLAFCTVGLLLLGPCPFLPFLTREGGCGNSLTTYSLVAGVWSCMYALGEVIGPFLGGFFLQHFGFPLAATVMAAMTFTLAIITLIYFLLKEKNSSEYERVSDSGISASWNSSYSSADLESGDDLTENEKQPLLNRNDGDHILYTMEKVMYYEQSRKQDKEGIEHETSQENLRAMAQWNPFYGVPNQSDSVYEEQNLSSQNYYGMQSAPYGSVSMQPYNGYYIPNNIYSNYGNVYNVQELEAQQFSAYNQNTNPSNSSTNDVASSSNNQMKHNKSDNRENAGVVSNDSSNSTLHATAAEFKPGSSVATNSQISSKTFYRNSQKHKVDNRNSKGAIRKTKEEVPINDELVKTETKPNNQRYSRNNLGQNYNNKSYKDRNNYSNKNYNRREEPNNEVENNQQSNSRYENRNNRYENRDSENRSNRYDKDSEPRNHRYENREQETSYNRYENRENNYGRNYRRPEYNRENNESSRANYRQNRPREENYNRNYRDYPDRNSDRNSFPRDSFKQFNSKPSYRNTRYDNKGYENWRTGPTAEQDKKNESKGKDDKSRYEVERKVYRNDNRIGKDDDKSQRDRLTDQVNKGTLECLVCCDRVRQQDKIWYCQMCYHIFHFRCIIKWGNTSKDDNGWRCPACQHVSSEIPSCCVCYCGKINDPAYNPGDTAHSCGDECGRLGVKPGCIHRCNLLCHPGPCPKCEALISKHCNCGATTQMVKCSAEAVLVCTAICSKQLKCGVHKCDKICHRDDCEECMETIDQECYCGKSNKIIPCSKEQVDIKYYSCEQVCDKLLSCGNHKCKDICHPGDCAPCERAPEQVKTCPCGKSKLEVVRSSCLDPIPCCGKICGKRYPLCGTSSTPHTCKSECHDGLCPSCLLTSFVRCRCGHMNCELTCSELVSRTDDARCEKKCTKKRSCGRHKCNQLCCIDIDHICPLPCNHMLTCGLHRCEETCHKGRCKPCWRISFDELYCECGSAVIYPPVPCGTKRPHCVKPCTRQHQCEHEPLHQCHSQPECPPCTVLTAKLCHGGHEKRTTIPCHQKDFSCGLPCGKDLPCGRHKCQLPCHKGPCLREGQSCTQSCTVIREGCGHPCNLPCHEPPCQDSPCKESVKVTCQCGLRSSTRVCVDMTGEYQRIATSMLASKMADMQLGHSIDIGDIVGTNARKQTLKTLECNDECRLVERNRRLAIGLQIRNPDLSAKLTPRYSDFMRQWTKKDTAFCQMVHDKLTELVQLAKQSKQKSRSFSFPSMNREKRQFIHEYCEHFGCESAAYDQEPNRNVVATAARDKAWLPSCSLLELIQRESGLRKVPGPILNRPLGVSKTSDTVSLKIPNKSTAGASSSTSFSSALQQQKTPEDIDYFNFPSGSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00767789;
90% Identity
-
80% Identity
-