Oard040516.1
Basic Information
- Insect
- Ophonus ardosiacus
- Gene Symbol
- -
- Assembly
- GCA_943138245.1
- Location
- CALPBP010001330.1:74088-80578[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.1 7.5e+02 2.5 0.5 2 20 260 277 260 279 0.70 2 15 0.00052 0.095 14.8 2.7 1 23 282 304 282 304 0.98 3 15 0.0001 0.019 17.0 3.7 1 23 319 341 319 341 0.98 4 15 1.5e-05 0.0027 19.7 1.3 1 23 347 369 347 369 0.98 5 15 0.0021 0.39 12.9 0.1 2 23 528 549 527 549 0.97 6 15 0.29 53 6.2 0.5 1 23 705 727 705 727 0.97 7 15 0.26 47 6.3 0.1 2 23 765 785 764 785 0.90 8 15 1.4e-05 0.0025 19.8 3.8 2 23 792 813 791 813 0.97 9 15 1.6 3e+02 3.8 0.0 2 23 910 930 909 930 0.90 10 15 0.0019 0.35 13.0 0.2 1 23 945 968 945 968 0.96 11 15 0.42 76 5.7 0.7 2 23 1068 1088 1067 1088 0.96 12 15 0.0021 0.38 12.9 7.7 1 23 1094 1116 1094 1116 0.98 13 15 0.00042 0.076 15.1 4.4 1 23 1122 1144 1122 1144 0.98 14 15 0.0053 0.97 11.6 1.1 2 23 1208 1229 1208 1229 0.98 15 15 0.002 0.36 12.9 2.5 1 23 1235 1257 1235 1257 0.95
Sequence Information
- Coding Sequence
- ATGCTCGCATATAGCACTGACTCGTCGAAGGACAACAGTTCAACTGTAGAAATAAATAACACAAACGTTGAAGATATTTTTGATGAAGAAGAGCAGTGTGAAGAAACTCCTAATGAACATGAGCTAGATAAAACTGCAGTATCGGAAATAAGTTATAACAAATTTGAAGAAACTCTCATTAAAGAACAACCGATGAAAGACTGCTACATGGATTCTGCAGATTACAACGAGAAAGTAAAACAATGTAATGATAAAGTGCAAATCACAAATACGTTTGAGAATAAGAAAGATAGTACTAACAATgcgattttagaaaaaaataataaaaatatggaagGGATTTCTGTCAAAAAAGAATATGAACTTGATGAAAGTGTAGAGCACAATACGAATATAGAACATATCTGTGAAGAAGAGAATATTATTGCGTcgggaacaagtaataaaaaaattgaagaaattctTATTAAAGAACAACCGATGGACTGTGAAGATTACAATAATCCAAACCAGAAAAAATGTAATAGAGAAATGCAAAGCACACAATGTGTACTCGATACTGGCGTAACctgttataaaattaatcaaaacagtacagaaaatatttCGGAAGAAGATAATATAGTATCGGAAACATGTAAtgataaatttgaagaaattcTTATTAAAGAACAACCGATGAAAGACAACTACATGGACTTTgacgattacaacaatcaaaatGAGGAAAAATGTAATGAAGAAGAAAGCTCCGACGTCTCTGAACAGAAAAAAAGACAATGCCCTATTTGCGAGAGATTTAGTCTGAAATATCACATGACAACACATATTGGTAAAAAGGAATTTGAGTGCTCTATATGCCACCAGTTATTcccaaataataataacctgCTGTATCATAGGAAAACTCATATTGGTACTGATGAAATTGAATCCATCAAATTAGCAAAGAATTTTCACTGTACTCTTTGCAATAAATCATTCGCGTACAAAAGAACTTTGGCATATCATATGAAAGTCCATAATGGTATAACAGATTTTAAATGCTCTTTATGTCCTAAGGCATTCGCACAGAAAAGCGTTCTGACAAGACATTTTAAAAGTCATACAGTGAATAGCACTAGCACAACGAAAAACATTAGTTTGATAGTAGAAGtagaaacaaataacaaaaacattgacGACACTTTTGTTaaagaagaacatgaaattgATAAAAGTGTTGTGCAATTTCCAACAAAATCTAACATAGACAATATTTCGGAAAAAGAGAATATTGAATCAGGAACAAGTAATCAAAAATTTGAAGATTTCAACAATCAGAACGAGGAAAAACGTAATGAAGAAATTCAAATCACACAATGCATTCTCGATACTAATCAAAACTGTTGTACATCTAATCAAATCAATACAGATTACAGTTTGGAAGAAGATAATATAAGTAATCGTAAATTTGATGACATTTTTATTGAAGAACAATCCGTAAAAGACAACTATACGAACTTGAACGATTGCAATAatcaaaatgagaaaaaatgtaatgaagatgtgcctttttgtgatatatttacACAAGACATTCAGTGTCCTATATGTCCTGAGTTGTTTGCACTGAAAAGGGACCTTGACACACATTTAAAAACGCATGCATTGAGTGATCAGAACTTTAATTACAATCAGGTACacataaataacattaacaTGGTATATGACGGTAGTTTAATTGTagaatcaaataataaaaatatggaagACATTTCTATCAAAGAAGAACAGTGTAACGAACTTACTTATAAACATGAACTTCATAAAAGTGTGGTGCAAAAGTCAACGAAAACAGAATGTCTAGTAgataatgtaaactgttatcaAACCAACCAAGTTGTTACGGAACATATTTCTGAAGAAAAGAATATAGTATCGGAAATAAGTAGTCGTAGATTTGAAGAAATTCTTATTGAAGAACAACCGATAAAAGACAATTACATGGACTTCGACGATAGCAACTATGATAATGagaaaaaatgtaatgaaaatgtGGATATTTGTAATGTATTTACACAAGCTGGTAATATGTTAGAACATACAGAAACATACCCTGAAAGCAATGTTTTTCATTGTCCTATATGTCCTGATTTATTTACACTGAAACTAGACCTTtatgaacatttaaaaatacatagatCGAATGACCAGAAGGACAGTGCGAATGTAGAAACAAATAATAAGAatgagaaaaaatataataatgaagAGCAAACCACAAGAAAAAAgattaaggaaaaaataatacaatgtcCTATTTGTAATGTATTTACAGAACGTGTTAATATGATAGAACATATAAAAACTCATTCTGAAAAACAAGATTTACAGTGCCCTACATGCCATAAGACGTTTACACGGAAAATGTATttatacattcatttaaaaacgcATACATTATGTGATGAGAATAATGACAATCAGGGGCATGGAGATAACACTGACGAAATTTCTATAAAAGAAGAACTGTACGAAAAAACTCCATCTGAATATGAACTTTATAAAAGTGTAAAAATCGACACAGAACATATTTCGGAAAAAGAGAGTTATAAATCTGAAGAAGCTGTCATTGATGAACAACCAAATAAAGGCAGCTTTAAGGACTACGaagattacaacaatcaaaaaGAGAAAGAATGTGATAAAGTgcaaattacaaatacatttaaGGATAAGAAAATACAGTGTcctatttgtaatatatttgcaCAAGCTGGTGATATGTTAGGACATATCAAAACGCATCCTGAAAGTAAAGCTTTTCAAATAGACTTTCAGACAAAATACTTTCAGTGTCCCATATGTCCTGAGTCGTTTGCACTAAAAAGAGACCTCTAcccacatttaaaaaaaatgcatgcGTTGAGTGATCAGATCATGACTTACAATCATAACATTGCGattgtaaaaacaaataataaaaatatggaagATATTTCCGATCAAGAAGAACGTGAACTTGATaagaatgtacaaaataatgtaaactattatcAAGTCGATACAGATCACATCTCGGAAGAAGAGAATATCGAATtcggaataaataataaaaaatttgaagaaatacttattaaagaagaaccgatGAAAGGCATTTACATGGTTCCAGAAGACTGCAACAATCAGAAACAAAAAACTTGGGAAATAAAAAGTCAGTGCcctatttgtaaattatttttactacgtGTTAATATGAACAGGCATCTAAGATCACATACTGGACACAGAGATTTCTGTTGTCATCTTTGTAAAAAAGGATTCACACAAAAAACGTCTTGGCAATATCATATGAAATCTCATTACGGtataaaaaattttcagtgttgTATATGCCATAAGTCATTTGCAAATAATAGCATCTTGAAAAcacatttaaatattcatacaaGAAACAGAACTGACATGCCAAAAGAAAACAGTTTGAGAATAGAAACAATTGTACAAGACAGTTctgttaaagaaaataaaaatatggtgTCAGCAATAGAAGACTCTGTAGATTACAACACTCAGAATGAGAGAACATGTAACGAAAAACACACAGAAAAGGAAGATAATAGTGTGCAAGAAAGGCAATGTCCCGTTTGCGcccaaatatttgtatatccctGTAGTATgagaagacatttaaaaaaacacaCTGGTAACGTAGATTACCGTTGTTATTTGTGTAATTTGTCATTCAAACATATTCAGAGTCTTAAAAGACATTTGGTAGCTCATACTGCTAATAAAGATTGCTCTATAAGTCATAAATGGGTTGCAAAGAAAAGTGTCTTGGAGACACATTTGTATATTCAGACTTCGAAGAGCAGTGACACAGCCAAAGAAGAAACAAATGGTAAAAATGTGCAAGACATTTCAGGTAAAGAATTGTGTAATGAAACTCCTTACGAAAATGAAATTTGTGGAGTTGATAAAACTATCCAAAATATCGCGCAAGAAGTACCGGTAGCAAGTAATGATAAACTTGAAAGAATTATTGTTGAAGAACAGTCGATGGAACAAAACTTCATAAACTCTGAAGAGAAAAAAGAAAAGTGCCCAATTTgtgGCGTTTGCAAAGAAAAGTGTTCTGAAAAACCATTTAAATATGCATATATCGACCGATAA
- Protein Sequence
- MLAYSTDSSKDNSSTVEINNTNVEDIFDEEEQCEETPNEHELDKTAVSEISYNKFEETLIKEQPMKDCYMDSADYNEKVKQCNDKVQITNTFENKKDSTNNAILEKNNKNMEGISVKKEYELDESVEHNTNIEHICEEENIIASGTSNKKIEEILIKEQPMDCEDYNNPNQKKCNREMQSTQCVLDTGVTCYKINQNSTENISEEDNIVSETCNDKFEEILIKEQPMKDNYMDFDDYNNQNEEKCNEEESSDVSEQKKRQCPICERFSLKYHMTTHIGKKEFECSICHQLFPNNNNLLYHRKTHIGTDEIESIKLAKNFHCTLCNKSFAYKRTLAYHMKVHNGITDFKCSLCPKAFAQKSVLTRHFKSHTVNSTSTTKNISLIVEVETNNKNIDDTFVKEEHEIDKSVVQFPTKSNIDNISEKENIESGTSNQKFEDFNNQNEEKRNEEIQITQCILDTNQNCCTSNQINTDYSLEEDNISNRKFDDIFIEEQSVKDNYTNLNDCNNQNEKKCNEDVPFCDIFTQDIQCPICPELFALKRDLDTHLKTHALSDQNFNYNQVHINNINMVYDGSLIVESNNKNMEDISIKEEQCNELTYKHELHKSVVQKSTKTECLVDNVNCYQTNQVVTEHISEEKNIVSEISSRRFEEILIEEQPIKDNYMDFDDSNYDNEKKCNENVDICNVFTQAGNMLEHTETYPESNVFHCPICPDLFTLKLDLYEHLKIHRSNDQKDSANVETNNKNEKKYNNEEQTTRKKIKEKIIQCPICNVFTERVNMIEHIKTHSEKQDLQCPTCHKTFTRKMYLYIHLKTHTLCDENNDNQGHGDNTDEISIKEELYEKTPSEYELYKSVKIDTEHISEKESYKSEEAVIDEQPNKGSFKDYEDYNNQKEKECDKVQITNTFKDKKIQCPICNIFAQAGDMLGHIKTHPESKAFQIDFQTKYFQCPICPESFALKRDLYPHLKKMHALSDQIMTYNHNIAIVKTNNKNMEDISDQEERELDKNVQNNVNYYQVDTDHISEEENIEFGINNKKFEEILIKEEPMKGIYMVPEDCNNQKQKTWEIKSQCPICKLFLLRVNMNRHLRSHTGHRDFCCHLCKKGFTQKTSWQYHMKSHYGIKNFQCCICHKSFANNSILKTHLNIHTRNRTDMPKENSLRIETIVQDSSVKENKNMVSAIEDSVDYNTQNERTCNEKHTEKEDNSVQERQCPVCAQIFVYPCSMRRHLKKHTGNVDYRCYLCNLSFKHIQSLKRHLVAHTANKDCSISHKWVAKKSVLETHLYIQTSKSSDTAKEETNGKNVQDISGKELCNETPYENEICGVDKTIQNIAQEVPVASNDKLERIIVEEQSMEQNFINSEEKKEKCPICGVCKEKCSEKPFKYAYIDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -