Basic Information

Insect: Ophonus ardosiacus
Gene Symbol: Prdm5
Assembly: GCA_943138245.1
Location: CALPBP010001235.1:129382-130971[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.3 1.5e+03 1.6 6.3 1 23 62 85 62 85 0.86

2 14 2.8 5.1e+02 3.0 7.0 2 23 117 139 116 139 0.95

3 14 0.04 7.3 8.8 1.6 2 23 163 184 162 184 0.96

4 14 0.00015 0.027 16.5 1.2 1 23 187 209 187 209 0.99

5 14 0.0011 0.2 13.8 0.4 3 23 216 236 214 236 0.91

6 14 0.0059 1.1 11.5 3.7 2 23 243 264 242 264 0.97

7 14 5e-05 0.0091 18.0 0.3 3 23 269 289 268 289 0.99

8 14 0.00013 0.024 16.7 5.0 1 20 295 314 295 317 0.95

9 14 2.7e-05 0.0049 18.8 1.3 1 23 323 345 323 345 0.98

10 14 2.5e-06 0.00046 22.1 1.9 1 23 351 373 351 373 0.97

11 14 0.89 1.6e+02 4.6 5.2 1 19 380 398 380 402 0.88

12 14 2e-05 0.0036 19.3 2.4 1 23 408 430 408 430 0.97

13 14 1.3e-05 0.0024 19.8 2.7 1 23 436 458 436 458 0.96

14 14 0.00018 0.034 16.2 7.2 1 23 464 487 464 487 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.3	1.5e+03	1.6	6.3	1	23	62	85	62	85	0.86
2	14	2.8	5.1e+02	3.0	7.0	2	23	117	139	116	139	0.95
3	14	0.04	7.3	8.8	1.6	2	23	163	184	162	184	0.96
4	14	0.00015	0.027	16.5	1.2	1	23	187	209	187	209	0.99
5	14	0.0011	0.2	13.8	0.4	3	23	216	236	214	236	0.91
6	14	0.0059	1.1	11.5	3.7	2	23	243	264	242	264	0.97
7	14	5e-05	0.0091	18.0	0.3	3	23	269	289	268	289	0.99
8	14	0.00013	0.024	16.7	5.0	1	20	295	314	295	317	0.95
9	14	2.7e-05	0.0049	18.8	1.3	1	23	323	345	323	345	0.98
10	14	2.5e-06	0.00046	22.1	1.9	1	23	351	373	351	373	0.97
11	14	0.89	1.6e+02	4.6	5.2	1	19	380	398	380	402	0.88
12	14	2e-05	0.0036	19.3	2.4	1	23	408	430	408	430	0.97
13	14	1.3e-05	0.0024	19.8	2.7	1	23	436	458	436	458	0.96
14	14	0.00018	0.034	16.2	7.2	1	23	464	487	464	487	0.97

Sequence Information

Coding Sequence: ATGACAAATAAAAACTATCGAATAGTTAAAGTAAAATTGTGTAAAAAGAAAGACAAACCGATTACAAAAACTATTAATAcggaaacacaaaaaaaattagacACAAATGACGCAAACGAACCTCAATCAAAAGAAGACACCAACACAGTCACTACTACAGAAAAGTTTCATTATGTGTACAAACACCAATGCTCAAAATGCTATAAAGTATATCGCATAGAACAACACCTAATATGCCACACAAAAGATCAACATCCAGAATTAGAAAAACCAGAAagcaaattaataaaagtgaaaaagaAAGGCGTTATCCGTATCTCGCCAAAACAACCCTCTACTACTCGTCTCGAATGTCTCCATTGCCATACACAACATCGAACAAAAGAATCTTTATTAAAACACACAAGATTATACCATCCTGCTGTAAAAATCGAAGAAGTGGTCTGCAggattttaaaatcaaaaaaatacagaaatcaCAGCATAACGTGCTTAAGATGCAGCGAAACCTTCGAAACTATTAAAAAGTATCGACTTCACATGACCAAACACGCCATATATAAATGCGAAGTTTGtggaattatttttgacaaattctACAAACTACGAAGCCacaaaaaagtacataatgtaatATTACAAACATGTATAGAATGTAATAAAGAGTTTCCCAGTAAAAGAGAACTAAAGAAACACGAAGAAATTCACATTGTAAACGAAAATGTCGAATGCGATATTTGCAAGGTTATGTGCACATCAAAATTTAAACTGAAGCAGCACAAAAGATATCATGTATCATCTTTATGCAATGTATGTGGAAAACTATTTGCTTCGGAGCAACAATTAAAGTATCATATCCAAACTCATTCAGACACGCGTCCTTACAAATGCTCAAACTGCGACAAAAGTTTTAAAACATCACAAACTCTAGCTAAACATAAAGAGTGCCATGCtttggacaaaaaatatgtttgtcaATTTTGCGGGAAACAGTTTAGAACTCAAggaacaataaaacaacatttACAATTACACAAAGATGTCAAAAAACATTCTTGTCGTGTCTGCGGAGTTAAATTCACCAGAAAAGGAAACTTAGTCAAACATATGGAACGACATAACCTCATCGACGATGTCTACAAATGTAAATTGTGCGAGAAACAATACAACAATTAccattctttaatatttcataaatgcaCAAAAACAGTCgctaaacaatatttttgtctaaCCTGCGAGAAAGCATTCCCCAGTAACTACCATCTAAAAATCCACCAACGTCTTCATTCTGGCGAAAGACCATTTTCGTGTGAAAAGTGTTCAAAGTCATTTAGAAGCAAGCAATCTCTAAAACAACATCGTGTAATCCATTTTGACAATTTCCCCCATGAGTGTCAGTATTGTGACAAAAAATTCAGAAGGCGTCAGACTCTGGCTATTCATAAAAGAAGATGCCACAGTGaggaaaagaataaaaaaaatgttttgaaacAAGAGGGGATGATTAGTGATGATATAACTAATGATGATCACAGTGTTGATGTGGAAAGTAATATTCTGCACTCTGTTTTAAAGCATAGTCCATAA
Protein Sequence: MTNKNYRIVKVKLCKKKDKPITKTINTETQKKLDTNDANEPQSKEDTNTVTTTEKFHYVYKHQCSKCYKVYRIEQHLICHTKDQHPELEKPESKLIKVKKKGVIRISPKQPSTTRLECLHCHTQHRTKESLLKHTRLYHPAVKIEEVVCRILKSKKYRNHSITCLRCSETFETIKKYRLHMTKHAIYKCEVCGIIFDKFYKLRSHKKVHNVILQTCIECNKEFPSKRELKKHEEIHIVNENVECDICKVMCTSKFKLKQHKRYHVSSLCNVCGKLFASEQQLKYHIQTHSDTRPYKCSNCDKSFKTSQTLAKHKECHALDKKYVCQFCGKQFRTQGTIKQHLQLHKDVKKHSCRVCGVKFTRKGNLVKHMERHNLIDDVYKCKLCEKQYNNYHSLIFHKCTKTVAKQYFCLTCEKAFPSNYHLKIHQRLHSGERPFSCEKCSKSFRSKQSLKQHRVIHFDNFPHECQYCDKKFRRRQTLAIHKRRCHSEEKNKKNVLKQEGMISDDITNDDHSVDVESNILHSVLKHSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -