Oard031848.1
Basic Information
- Insect
- Ophonus ardosiacus
- Gene Symbol
- -
- Assembly
- GCA_943138245.1
- Location
- CALPBP010000943.1:1042132-1054602[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00042 0.077 15.1 0.9 2 23 28 49 27 49 0.95 2 15 0.0018 0.33 13.1 0.7 1 23 55 78 55 78 0.95 3 15 0.0011 0.2 13.8 1.6 2 23 82 104 81 104 0.95 4 15 0.0005 0.09 14.9 0.4 3 20 114 131 112 133 0.92 5 15 0.00063 0.12 14.5 0.5 1 23 141 163 141 163 0.99 6 15 0.0077 1.4 11.1 0.4 1 23 169 191 169 191 0.97 7 15 0.0032 0.59 12.3 3.7 1 23 197 219 197 219 0.93 8 15 0.00046 0.084 14.9 1.8 1 23 225 247 225 247 0.99 9 15 6.2 1.1e+03 2.0 2.2 3 23 500 520 498 520 0.95 10 15 2.7e-05 0.005 18.8 0.4 2 23 561 583 560 583 0.92 11 15 2.9e-05 0.0053 18.7 0.1 1 21 593 613 593 614 0.93 12 15 3.4e-07 6.2e-05 24.8 1.2 1 23 622 644 622 644 0.98 13 15 0.00092 0.17 14.0 2.3 3 23 652 672 651 672 0.98 14 15 9.7e-05 0.018 17.1 0.6 1 23 678 700 678 700 0.93 15 15 0.53 96 5.3 3.5 3 23 708 728 706 728 0.94
Sequence Information
- Coding Sequence
- ATGAAACCAAATAATGAATATGGAAATATTTCCCCGCATAACAAAataaaggTAGAAAACATAGAAGATGAAAAGAAAACAGTATGTTCAATATGTGGTCAAAAATTCCGTTTCTTTAAAGCATTACAAAAACACGAAGCCCGACATCAGGGCGAAGGAGgatttatttgtaaaacttGTGGGATGCAATTTACATCATCAGAAGCACGAGAAAAACACAGAGATAAAGTGCACAAAGTTTTGCGctgtaaaatttgtaatattcgATTTCAAACTGAGTCCGAATATTTAcatcatataaataatttgcatGAGGGTCGCGATCGAGAATTATCAATTTGCAGCGCGTGtggcaaacaatttaaaacaaaaggaGAATTGACTCATCATGTTTCGTCTAAATGTGGAACTGTAAAAAAATACCAGTGTCCTGTTTGCTTGCAAACTTTAATGACTCCAGGGTCTCTTCATAATCATATGCTACGCCACACGGGAGAACGAACATTCATGTGCAGATTTTGTGCCAAGACATTTTTAACTGCTGGCCAGTTAACTGTTCATGAAAGAATACATACCCAAGAAAAAGCTTTCATATGCGAGGTATGTAATAAAGGTTTCTGTCATAGACAAAGCCTAATAACTCATAGTACTCTACATACAGGAATTAAGCCATACCAGTGTGAAGGATGTGGAAATTCTTTTTCATGTGTAGGAAACCTTTTAAAACATCGTAAAACTCATTCCGATAGTTGCGGTAAAATAGCTCTAACTACCCATAGAGTTAAACATCCTGCTACTAAATTAAAAGTACAAGTAAATACACCCGCTACTTCAAAACTACGAACTTTAGAAAAACGTAAGAAATTGGAACAAATTACAACTGAAGTTAATAATGAACAATCTTGGCAAAAAGAAGAAGCAAACAGCAATAATAGCCTACAATCTAACGAATTGTCACAGGAGTTTGAGAAAactattaatgaaaatagtgaaaatttcATAGGCCCGGAACTAAATATTGATGTTAAGATgcagGAAAATTTTACCACtcatgaaaatatattacctTTAGAACCTAATGTCTGTATAAAAGATGAAAATTGGATTtcttcaacaaaaataaatgaagaacAAACGTACACACTTTTAAATTcaagtcaaaaatatgattttgattcAAATAACTATAATTATGTACAAACTTCGGACAAAAATGAAGAAGTAATACTTGGAATTGAACCtgaagaaaatttagaatttcaaaACGCTGAAGAATCCGTAGAAGATAATACAGATTGGGCAGAAGATGATCAATTTAATCACGATAGTGATTCTTCCGAAGATTCTGTTGATTTACAAACAAGAAAACAAAAGTCGAAGaagaaagaacaaaaaaataaaaagaaagtgAAAATCAAGAAGGAACAAGCAGTAGATAAAGCTGAATTACAACGATTTATTGAAGAACGAGGATttgATGAAATAAATGGAATGAACTGCAAATTTTGCGGCAGTCATTATTTAAACCCTCTTTGGCTTTTCAAACATGAAAAGAAACACGAAGATACTTTGAAAAATGGAGAAGTAAAAGGATTTTTCAAATGTAGCTGTTGCCCAAGTACCTTTAAAACTAAAGATGACTGTGTTAATCATCAACACTTTCAACACGTAAATGAATTAAcGTGCAAAGAATGTGATCGAATATTCGCTAACCCTGATAGCTTGAAAGCTCATAAAAATTTCTACCATTTAGGCGTTCCTCGAAAACGTTACGTTTATGTTTGCGAAAAGTGTGGGCGAGTGTTCAAACAAAAAGCTTTGCTCGTTGTGCATGAACAGAGCTCATGTGGTTCTGGACCAATGTTCCCATGTAATGTGTGTGGAAAAGGATTTTCAAGTAAACACGTCCTGAAAAGTCATATGCGGGTACATGAACCAGAAAAGTctcttttatgtaaatattgtgGAAAGAGTTTCCACTGGAAAGGACAGCTTAAAATTCATGAAAGAAGCCACACCGGGGAAACGCCGTTTCAGTGCCAgtacTGTCCAAAAGCTTTTGCATATCGGGAGAGCCTAATAACGCATAATACTCTACATACGGGAATAAAACCACATTTATGTGAAGCATGTGGATCTAGGTTCTCATGTAtaggaaatttattaaaacaccGAAGAACTCATGCTAATACATGTGGAATTACTACATCACAGACACAAACTCCAGTCAAGACTGAAGTAATGGCTACGTAA
- Protein Sequence
- MKPNNEYGNISPHNKIKVENIEDEKKTVCSICGQKFRFFKALQKHEARHQGEGGFICKTCGMQFTSSEAREKHRDKVHKVLRCKICNIRFQTESEYLHHINNLHEGRDRELSICSACGKQFKTKGELTHHVSSKCGTVKKYQCPVCLQTLMTPGSLHNHMLRHTGERTFMCRFCAKTFLTAGQLTVHERIHTQEKAFICEVCNKGFCHRQSLITHSTLHTGIKPYQCEGCGNSFSCVGNLLKHRKTHSDSCGKIALTTHRVKHPATKLKVQVNTPATSKLRTLEKRKKLEQITTEVNNEQSWQKEEANSNNSLQSNELSQEFEKTINENSENFIGPELNIDVKMQENFTTHENILPLEPNVCIKDENWISSTKINEEQTYTLLNSSQKYDFDSNNYNYVQTSDKNEEVILGIEPEENLEFQNAEESVEDNTDWAEDDQFNHDSDSSEDSVDLQTRKQKSKKKEQKNKKKVKIKKEQAVDKAELQRFIEERGFDEINGMNCKFCGSHYLNPLWLFKHEKKHEDTLKNGEVKGFFKCSCCPSTFKTKDDCVNHQHFQHVNELTCKECDRIFANPDSLKAHKNFYHLGVPRKRYVYVCEKCGRVFKQKALLVVHEQSSCGSGPMFPCNVCGKGFSSKHVLKSHMRVHEPEKSLLCKYCGKSFHWKGQLKIHERSHTGETPFQCQYCPKAFAYRESLITHNTLHTGIKPHLCEACGSRFSCIGNLLKHRRTHANTCGITTSQTQTPVKTEVMAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00767484;
- 90% Identity
- iTF_00767484;
- 80% Identity
- -