Oard027134.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ophonus ardosiacus
Gene Symbol
-
Assembly
GCA_943138245.1
Location
CALPBP010000746.1:93770-96898[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 3.2e-05 0.0059 18.6 0.2 1 23 117 139 117 139 0.99
2 10 0.066 12 8.2 0.3 3 23 150 169 148 169 0.79
3 10 7.4e-07 0.00013 23.8 4.6 1 23 204 226 204 226 0.99
4 10 1.7e-05 0.003 19.5 4.9 1 23 232 254 232 254 0.98
5 10 1.6e-07 2.9e-05 25.8 3.0 1 23 260 282 260 282 0.98
6 10 9.8e-10 1.8e-07 32.8 2.4 1 23 295 317 295 317 0.99
7 10 0.00014 0.025 16.6 3.8 1 23 323 345 323 345 0.98
8 10 0.00012 0.022 16.8 4.3 1 23 351 373 351 373 0.99
9 10 7.8e-08 1.4e-05 26.8 0.7 1 23 386 408 386 408 0.99
10 10 2.6 4.7e+02 3.2 0.4 15 23 520 528 514 528 0.90

Sequence Information

Coding Sequence
ATGTGTGAAAAGTACCTGGACACCTTTagtaaatttaaacagaatAACGTGGGCAACAACCTCCACGAAGAATTGAACGAGGATGCGCAGAGAAACAGGGACACCATTGCGCATGCTTCAACTAATCCGGAAACCAAAGAGAGAGACAACGCTGATAAAATGGAGGCCAGTACGTCGGATCACAGTAAAATATCCATACAATCCAACAATAGTGTGCAAGAAGAATcggatattaaaaattttgaagaagttTATATTGAAGAGGGAACGATAGATGAAAATTTTACAGATTCAGAGAGTAGTAATGATCGGCAAAATCAAGCcacatcaaaaattgaaactacTAGGTTTGAGTGTTCTGTATGTCCCGCATATTTTGCATATGGTCAAAATTTGATACGACATATGAGGACTCATTTTGTTGAGACTTATGAAAAGAAACTGGAATGTCTCATTTGTAGCACATTTATAGATCGTGCCAATTTGACCAAGCATTTAAAAGAACATGTTGGTGTCGAAGATTTTCAATGCCATTTATGTGataGTAGTAACATGAGGAGACACGAAAGAAATCATGACgaaaactataaacaattaCGTAAAGAAGCttacaaatgtacaatttgcAACAAAATTTGTTATGATAGCAGTAATTTGAAACGACACATGAAGAACCATTTCGGAATCAGAGATTTCCATTGCAGTGTATGTGATAagaaatttacacaaaaaaacaGTTTGGATTACCATATGAAAACACACAGTGGTCGTCGGGATTTTCATTGCGAAATATGTAGCAAaacatttataacaaaaagtaacCTCAATAGTCACATGAAAATACACAGCGACGAAAAGATTAAACGAACATCTACAAAAACGTATCAATGTCCTGAATGCAACAAAACTTTTACTGACAGCAGTAATATGAAACGACACATGAGGAAACATTCCGGAATTAAAGATTTCCATTGCAGTTTATGTGATaagtattttacacaaaaaaccAGTTTGGATTATCATATGAATATACACAGTAGTCGTCGGGATTTCCAATGTGAAATATGTTGCAAAACCTTCATAACAAAAGGTAACCTCCATATTCACTTGCAAACACACAACGATGTAAAGAATAAACGAATATCTACAAAAACTTATCAATGTCCTTTATGCGATAAAGTCTCCACAGACAATAGCAACATGAAGAGACATATCAAAACACACAAAGATGCCGAAGGAAAAGAAATCCCAATAAAGATTTATCAGAACAACGTGGACAACAAGTTGCACGAAGAAGCGAACGAAGATGCGCATGCGTCAACTGGTCCAGAAGATAGAGACGGAAACAACGCTGACGAAATGGACGTCAGTACGCCGAGTTACAGTGAAATGTCTGTAGAATCCAACAATATTGTACAAGAAGAAtcggatattaaaatttttgaagaagTTCATATTAAAATGGAGACGATGGTTGAAAATTCCACAGATTCGGAGAGTAGTAATGATCAAAAAAATCAAGCCACTTTAAAAGTTGAAACTACCAGAGCTACTAATTATCTAAATCAGCATATGAAAACCCACAATAAACATACTAAAACAGGTGCTAGAGATTCAAATGATGAAAGTGCGGTGCAAGAAAAGAGTGATGCGAACATTGAAAACACCAGTATCAAAGAAGAACCAAAGGAATTCATTTCAACTGACTGTGAAGATTACAGTGATAAACATAACGAAGATATTTCAATAAAAGAAGAATCTCTGGAACAAAATCCCAATGATTgtgaattttataataacatagtGCAAGCCATAATAAAAGACGATAAGACATTTGATGATCAAACATAA
Protein Sequence
MCEKYLDTFSKFKQNNVGNNLHEELNEDAQRNRDTIAHASTNPETKERDNADKMEASTSDHSKISIQSNNSVQEESDIKNFEEVYIEEGTIDENFTDSESSNDRQNQATSKIETTRFECSVCPAYFAYGQNLIRHMRTHFVETYEKKLECLICSTFIDRANLTKHLKEHVGVEDFQCHLCDSSNMRRHERNHDENYKQLRKEAYKCTICNKICYDSSNLKRHMKNHFGIRDFHCSVCDKKFTQKNSLDYHMKTHSGRRDFHCEICSKTFITKSNLNSHMKIHSDEKIKRTSTKTYQCPECNKTFTDSSNMKRHMRKHSGIKDFHCSLCDKYFTQKTSLDYHMNIHSSRRDFQCEICCKTFITKGNLHIHLQTHNDVKNKRISTKTYQCPLCDKVSTDNSNMKRHIKTHKDAEGKEIPIKIYQNNVDNKLHEEANEDAHASTGPEDRDGNNADEMDVSTPSYSEMSVESNNIVQEESDIKIFEEVHIKMETMVENSTDSESSNDQKNQATLKVETTRATNYLNQHMKTHNKHTKTGARDSNDESAVQEKSDANIENTSIKEEPKEFISTDCEDYSDKHNEDISIKEESLEQNPNDCEFYNNIVQAIIKDDKTFDDQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-