Basic Information

Insect: Ophonus ardosiacus
Gene Symbol: SCRT1
Assembly: GCA_943138245.1
Location: CALPBP010000297.1:216167-226618[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00046 0.084 15.0 0.2 1 23 64 86 64 86 0.95

2 12 2.4e-05 0.0044 19.0 1.6 1 23 94 116 94 116 0.99

3 12 4.3e-06 0.00079 21.3 0.4 2 23 124 145 123 145 0.97

4 12 1.2e-06 0.00021 23.1 1.0 1 23 151 173 151 173 0.99

5 12 1.5e-05 0.0028 19.6 3.9 1 23 180 202 180 202 0.99

6 12 3.4e-06 0.00062 21.7 0.5 1 23 208 230 208 230 0.96

7 12 4.8e-06 0.00088 21.2 0.1 1 23 236 258 236 258 0.98

8 12 6.1e-07 0.00011 24.0 1.2 1 23 264 287 264 287 0.96

9 12 4.8e-05 0.0088 18.0 0.7 1 23 293 316 293 316 0.96

10 12 5.5e-06 0.001 21.0 2.7 1 23 322 344 322 344 0.99

11 12 9.3e-05 0.017 17.1 0.4 1 23 350 372 350 372 0.94

12 12 0.0005 0.092 14.8 0.1 1 23 378 402 378 402 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00046	0.084	15.0	0.2	1	23	64	86	64	86	0.95
2	12	2.4e-05	0.0044	19.0	1.6	1	23	94	116	94	116	0.99
3	12	4.3e-06	0.00079	21.3	0.4	2	23	124	145	123	145	0.97
4	12	1.2e-06	0.00021	23.1	1.0	1	23	151	173	151	173	0.99
5	12	1.5e-05	0.0028	19.6	3.9	1	23	180	202	180	202	0.99
6	12	3.4e-06	0.00062	21.7	0.5	1	23	208	230	208	230	0.96
7	12	4.8e-06	0.00088	21.2	0.1	1	23	236	258	236	258	0.98
8	12	6.1e-07	0.00011	24.0	1.2	1	23	264	287	264	287	0.96
9	12	4.8e-05	0.0088	18.0	0.7	1	23	293	316	293	316	0.96
10	12	5.5e-06	0.001	21.0	2.7	1	23	322	344	322	344	0.99
11	12	9.3e-05	0.017	17.1	0.4	1	23	350	372	350	372	0.94
12	12	0.0005	0.092	14.8	0.1	1	23	378	402	378	402	0.92

Sequence Information

Coding Sequence: ATGCCAAATCTCAACTCCTTTACACAGCTTTCGCGCGCGTTTCCCTTCGATTATGCGCGGTACCTCGGGTGCATTGTAAGCCGCGATGGTAACATCTACACCTGCCTGGCCTGTGACACTGACGAAAAATTCTCTGGCGAGCCAAAGGCAATCATGCTACACGTAAAGAACGAACACGAGCTTCGGGTGTACATTTGCGACGTTTGTGGGCAAGATTTCCGCAAGCGAAATGAGCTGAGTATGCATTTGGACGAACACGTCGCCACAGAAGAGGGCGATTTCCAGTGCGAGGTTTGCAATCGTATTTTCAGCAACCTTCGTTTATTTAGGATACATAAGAGAATGCATTATCCACAGTCGAAATTGTGGACGTGTGAAACTTGCGGAAAGCGATACAGCTCCCGCAACCTGCTGGAAGAACACATCAACACCCACACCGGCCTCCGTCCTTACGTCTGCAAAATTTGCGGCAAAGACTTCGCCAGCAAGTACACCTACAAAGCCCACGAAAAGACTCACGAGGTTCGACCGCGACCTTACAAGTGTTCACACTGCCCCAAATCTTTCCTATCGCAGCAGAACCTCACTCAACACGAACGCACGCACTCCGGAATAAAAGAATACGTTTGTCATCTTTGTGGAAAGGCATTCGGAAACCCACATAACCTAGAAGTGCATAGTATAGTGCACACGGGGTACAAGCCGTATATTTGTGGTATTTGTGGCAAGGCATTTGCGAGGAAGGCGGAGATTCGGGATCACGAAAGAACGCACACAGGCGAACGCCCATACCAATGCGAATTCTGCGGCGCCACGTTCTCCCAACGTAGCAACTTACAGTCCCACAAACGGGCAACACATTACGACGACAAGCGCTACAAATGCCAGGCGTGTGGCAAGGGATTCAAGCGACGCCGTTTGCTAGACTACCATATGAAAGCGGCACACACAGGCGAGCGTCCTTTCAAGTGCACAGTATGCGACGCTACGTTTGTTTATCCTGAACATTTTAAGAAGCATCGAAGGATCCATACAGGAGAGAAGCCGTTCTTGTGTGAGGTGTGTGGGAAGGCGTTCAATAGCAGGGATAATAGGAATGCACACAGATTCGTTCACAGCGACAAAAAACCCTACGAATGTCTAGTCTGCGGAATGGGTTTCATGCGCAAACCTTTACTCTACGCTCACATGCAATCCCAAGGTCATTTAAACGACACCATCGTCGTCAATCAGCCTCGTCTCACTACCGACGACGACCAAATCGTCACCGTCAACATGAACGGAGAAATGGAACTGGTGGAGCACGAAGTTGGCCGTCTAGAGCACATTGGCTCTGAAGCAGAGGATGGCGATGCTAGTGAAGATACGAAGCTGTACATAGCGGAGTTGAAGGAGCATGTCATCATACAGGATAGTGATCTGTATGGGAATAGCAAAGGGGCGATGATTGTAGGAGAGCCCTTGGATGGAGAGACAGAGGAAGCGGTGCAAGATGCAGTCAAACATTTGATCATTGATGGACAGGAAGTACAATTCACCGGTGGCGACGATGATTCTGAAGAGCACCACGTGCTCACCACTCAAACAATCGTAAACGAGAACGGAGAATACGAGGAGATCGTAACCACAGACGAGCTTGTTGAAGGAGACACCCAAACAATCCAGACATCGTCTGGACCAGTCCAGCTGGTGCGAATTCGAATACCCAACGGCGACGGTGAAGAAGAAGATGCTTGGGTTAAAATTGTACCCGAGTAA
Protein Sequence: MPNLNSFTQLSRAFPFDYARYLGCIVSRDGNIYTCLACDTDEKFSGEPKAIMLHVKNEHELRVYICDVCGQDFRKRNELSMHLDEHVATEEGDFQCEVCNRIFSNLRLFRIHKRMHYPQSKLWTCETCGKRYSSRNLLEEHINTHTGLRPYVCKICGKDFASKYTYKAHEKTHEVRPRPYKCSHCPKSFLSQQNLTQHERTHSGIKEYVCHLCGKAFGNPHNLEVHSIVHTGYKPYICGICGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCQACGKGFKRRRLLDYHMKAAHTGERPFKCTVCDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYAHMQSQGHLNDTIVVNQPRLTTDDDQIVTVNMNGEMELVEHEVGRLEHIGSEAEDGDASEDTKLYIAELKEHVIIQDSDLYGNSKGAMIVGEPLDGETEEAVQDAVKHLIIDGQEVQFTGGDDDSEEHHVLTTQTIVNENGEYEEIVTTDELVEGDTQTIQTSSGPVQLVRIRIPNGDGEEEDAWVKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -