Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 8.8e-07 0.00056 21.2 0.0 3 43 13 53 11 55 0.90

2 3 3.6 2.3e+03 0.0 0.0 23 31 101 109 100 109 0.91

3 3 5.3 3.3e+03 -0.5 0.0 32 42 223 233 219 235 0.78

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	8.8e-07	0.00056	21.2	3	43	13	53	11	55	0.90
2	3	3.6	2.3e+03	0.0	23	31	101	109	100	109	0.91
3	3	5.3	3.3e+03	-0.5	32	42	223	233	219	235	0.78

Coding Sequence: ATGTCAAAAAGAGGACACTATGGATTATGGTCTGAAAATGATTTATTGTTTGCTGTTGCCGCATACAAAAACGGTGATTACGGTTTAAATGAATGCAGTCGTGTGTATGGTGTTCCCAAGGCAACTATCAAAAGACATGCTGATGAAAAAAACTCCGTTCGCAATAATGTTAAAGCATTAGGTAGACCGCCgatattttctacagatatggaAAGAATTATTTGTGAGCACATCCTTCACCTTGAAGAATGCTTTTTTGGtttaataattaaggaaatCAGAAAACTAGCTTTTGATGTTGCAGAAAAATATGACTTACCACATAGTTTcactagaaataaaaaaattgctgGTAAAAAATGGTTCTACGCATTTTTGAAACGAAATCCCCAACTTTCGCTCCGGAAACCCGAAGGAACCTCAATAGCGAGAGCCAGAGGCTTTAATAGAGAGAATGTCAATCATTTTTTCGATCTCTTAGAACGAATTGTCGATGAGCATAAATTTACAGCCGACACTATATTTAACGTGGACGAATCTGGGTTTACCACTGTGCAAAAGAGTCTCCCAAAAATAGTTGCTCGTAAAGGAAAGCACCAGGTAGGAAGTCTAACTAGTGGTGAACGTGGCGTCAATACAACTATGGTGTGTGCAGTTAGTGCTGCTGGtctatatcgtcgcgttcaaggcaaaacgacacaagcgccaattacataa
Protein Sequence: MSKRGHYGLWSENDLLFAVAAYKNGDYGLNECSRVYGVPKATIKRHADEKNSVRNNVKALGRPPIFSTDMERIICEHILHLEECFFGLIIKEIRKLAFDVAEKYDLPHSFTRNKKIAGKKWFYAFLKRNPQLSLRKPEGTSIARARGFNRENVNHFFDLLERIVDEHKFTADTIFNVDESGFTTVQKSLPKIVARKGKHQVGSLTSGERGVNTTMVCAVSAAGLYRRVQGKTTQAPIT

Sequence clustering based on sequence similarity using MMseqs2